RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
560047 560047 PRJNA575566_P_NODE_18681_length_243_cov_1.758242_g18484_i0 PRJNA575566 18681 243 1.758242 4.27252806 Annelida 6340 Annelida Annelida 128 3.4e-32   NR XP_009022669.1 6412 g18484 i0 77.8 11.3950617283951 81 17 98.8 1 1 240 476 556 XP_009022669.1 hypothetical protein HELRODRAFT_185027 [Helobdella robusta] diamond 2769 128 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta
26776795 26776795 PRJNA575566_P_NODE_8561_length_358_cov_1.814815_g8364_i0 PRJNA575566 8561 358 1.814815 6.4970377 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 78.6 3.7e-14   NR CAH1795464.1 6347 g8364 i0 41.3 5.46368715083799 109 55 91.3 3 30 356 444 543 CAH1795464.1 unnamed protein product [Owenia fusiformis] diamond 1956 78.6 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Sabellida Oweniidae Owenia Owenia fusiformis
30283072 30283072 PRJNA575566_P_NODE_16432_length_260_cov_1.477387_g16235_i0 PRJNA575566 16432 260 1.477387 3.8412062 Metazoa 33208 Annelida Annelida 73.2 4.7e-13   NR XP_009020629.1 6412 g16235 i0 47.3 2.53846153846154 74 39 85.4 0 260 39 220 293 XP_009020629.1 hypothetical protein HELRODRAFT_185715 [Helobdella robusta] diamond 660 73.2 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;