RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA575566 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13314151 13314151 PRJNA575566_P_NODE_28811_length_202_cov_1.361702_g28614_i0 PRJNA575566 28811 202 1.361702 2.75063804 Chlorophyta 3041 Plants Plants 97.8 4.04e-22   NR NP_042252.1 3111 g28614 i0 83 17.3168316831683 53 9 78.7 0 1 159 348 400 NP_042252.1 NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii] diamond 3498 97.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
14589052 14589052 PRJNA575566_P_NODE_4432_length_497_cov_1.165138_g4235_i0 PRJNA575566 4432 497 1.165138 5.79073586 Raphidocelis subcapitata 307507 Plants Plants 113 3.37e-26   NR GBF94078.1 307507 g4235 i0 38.9 1.73843058350101 144 88 86.9 0 10 441 294 437 GBF94078.1 COP9 signalosome complex subunit [Raphidocelis subcapitata] diamond 864 113 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata
24786226 24786226 PRJNA575566_P_NODE_20720_length_230_cov_1.218935_g20523_i0 PRJNA575566 20720 230 1.218935 2.8035505 Scenedesmus 3087 Plants Plants 127 3.83e-35   NR KAF6251048.1 2650976 g20523 i0 80.8 16.3173913043478 73 14 95.2 0 11 229 1 73 KAF6251048.1 ribosomal protein S8 [Scenedesmus sp. NREL 46B-D3] diamond 3753 128 0.9921875 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
27124390 27124390 PRJNA575566_P_NODE_15322_length_269_cov_1.538462_g15125_i0 PRJNA575566 15322 269 1.538462 4.13846278 Eukaryota 2759 Plants Plants 98.2 3.56e-22   NR CAL5218399.1 1274662 g15125 i0 51.6 2.02973977695167 91 42 99.3 1 267 1 173 263 CAL5218399.1 g74 [Coccomyxa viridis] diamond 546 99 0.991919191919192 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
28247942 28247942 PRJNA575566_P_NODE_27486_length_204_cov_0.895105_g27289_i0 PRJNA575566 27486 204 0.895105 1.8260142 Coccomyxa subellipsoidea 248742 Plants Plants 87.4 3.49e-18   NR KAK9916882.1 248742 g27289 i0 60 1.02941176470588 70 25 98.5 1 202 2 73 142 KAK9916882.1 hypothetical protein WJX75_008277 [Coccomyxa subellipsoidea] diamond 210 87.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
28532451 28532451 PRJNA575566_P_NODE_29367_length_202_cov_0.907801_g29170_i0 PRJNA575566 29367 202 0.907801 1.83375802 Chlorella vulgaris 3077 Plants Plants 48.1 2.61e-4   NR KAI3428226.1 3077 g29170 i0 46.3 0.801980198019802 54 29 80.2 0 200 39 136 189 KAI3428226.1 hypothetical protein D9Q98_006606 [Chlorella vulgaris] diamond 162 48.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
29795050 29795050 PRJNA575566_P_NODE_17011_length_256_cov_0.984615_g16814_i0 PRJNA575566 17011 256 0.984615 2.5206144 Trebouxia sp. A1-2 2608996 Plants Plants 43.5 0.0234   NR KAA6429529.1 2608996 g16814 i0 36.8 1.01953125 87 51 98.4 3 3 254 77 162 KAA6429529.1 MAG: cullin-associated NEDD8-dissociated 1-like [Trebouxia sp. A1-2] diamond 261 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. A1-2
32039456 32039456 PRJNA575566_P_NODE_21458_length_225_cov_2.268293_g21261_i0 PRJNA575566 21458 225 2.268293 5.10365925 Chlorella sorokiniana 3076 Plants Plants 90.1 6.13e-19   NR PRW51008.1 3076 g21261 i0 63.1 4.37333333333333 65 24 86.7 0 215 21 978 1042 PRW51008.1 eukaryotic translation elongation factor 1 alpha 2 [Chlorella sorokiniana] diamond 984 90.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
32229461 32229461 PRJNA575566_P_NODE_8178_length_367_cov_1.633987_g7981_i0 PRJNA575566 8178 367 1.633987 5.99673229 Coccomyxa subellipsoidea 248742 Plants Plants 67 2.49e-11   NR KAK9904198.1 248742 g7981 i0 40.9 0.940054495912807 115 64 93.2 2 360 19 2 113 KAK9904198.1 hypothetical protein WJX75_006622 [Coccomyxa subellipsoidea] diamond 345 67 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;