contig_metadata
7 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28609016 | 28609016 | PRJNA575566_P_NODE_7887_length_374_cov_1.191693_g7690_i0 | PRJNA575566 | 7887 | 374 | 1.191693 | 4.45693182 | Bacteria | 2 | Bacteria | Bacteria | 105 | 1.69e-23 | NR | MEI8213485.1 | 2026780 | g7690 | i0 | 49.6 | 2.00534759358289 | 121 | 57 | 96.3 | 2 | 374 | 15 | 132 | 249 | MEI8213485.1 peroxidase family protein [Planctomycetota bacterium] | diamond | 750 | 106 | 0.990566037735849 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 29069202 | 29069202 | PRJNA575566_P_NODE_24548_length_209_cov_0.864865_g24351_i0 | PRJNA575566 | 24548 | 209 | 0.864865 | 1.80756785 | Simkania sp. | 34094 | Bacteria | Bacteria | 48.1 | 2.98e-4 | NR | MBS3903878.1 | 34094 | g24351 | i0 | 43.5 | 0.990430622009569 | 69 | 38 | 99 | 1 | 1 | 207 | 257 | 324 | MBS3903878.1 PDZ domain-containing protein [Simkania sp.] | diamond | 207 | 48.1 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Simkaniaceae | Simkania | Simkania sp. | |
| 29745415 | 29745415 | PRJNA575566_P_NODE_28430_length_203_cov_0.901408_g28233_i0 | PRJNA575566 | 28430 | 203 | 0.901408 | 1.82985824 | Bacteria | 2 | Bacteria | Bacteria | 43.5 | 0.0121 | NR | WP_096894051.1 | 1284222 | g28233 | i0 | 52.8 | 6.65024630541872 | 36 | 17 | 53.2 | 0 | 96 | 203 | 1356 | 1391 | WP_096894051.1 tetratricopeptide repeat protein [Candidatus Scalindua japonica] | diamond | 1350 | 43.9 | 0.990888382687927 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Candidatus Brocadiia | Candidatus Brocadiales | Candidatus Scalinduaceae | Candidatus Scalindua | Candidatus Scalindua japonica | |
| 30174255 | 30174255 | PRJNA575566_P_NODE_1892_length_746_cov_2.769343_g1713_i0 | PRJNA575566 | 1892 | 746 | 2.769343 | 20.65929878 | Paludisphaera sp. | 2017432 | Bacteria | Bacteria | 53.5 | 1.95e-4 | NR | WP_337176277.1 | 2017432 | g1713 | i0 | 29.9 | 1.60053619302949 | 197 | 117 | 74 | 9 | 684 | 133 | 26 | 214 | WP_337176277.1 hypothetical protein [Paludisphaera sp.] | diamond | 1194 | 53.5 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Paludisphaera | Paludisphaera sp. | |
| 31185100 | 31185100 | PRJNA575566_P_NODE_22075_length_221_cov_1.600000_g21878_i0 | PRJNA575566 | 22075 | 221 | 1.6 | 3.536 | Kiritimatiellia bacterium | 2212473 | Bacteria | Bacteria | 67.4 | 3.41e-12 | NR | MCB1068935.1 | 2212473 | g21878 | i0 | 55.7 | 0.950226244343891 | 70 | 28 | 91 | 1 | 10 | 210 | 55 | 124 | MCB1068935.1 30S ribosomal protein S13 [Kiritimatiellia bacterium] | diamond | 210 | 67.4 | 1 | Bacteria | PVC group | Pseudomonadati | Kiritimatiellota | Kiritimatiellia | Kiritimatiellia bacterium | ||||
| 31280164 | 31280164 | PRJNA575566_P_NODE_19975_length_235_cov_0.850575_g19778_i0 | PRJNA575566 | 19975 | 235 | 0.850575 | 1.99885125 | Luteolibacter sp. | 1962973 | Bacteria | Bacteria | 42.4 | 0.0459 | NR | MEO7098011.1 | 1962973 | g19778 | i0 | 40.8 | 0.625531914893617 | 49 | 25 | 58.7 | 2 | 17 | 154 | 313 | 360 | MEO7098011.1 MBOAT family O-acyltransferase [Luteolibacter sp.] | diamond | 147 | 42.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. | |
| 32860608 | 32860608 | PRJNA575566_P_NODE_27240_length_205_cov_0.888889_g27043_i0 | PRJNA575566 | 27240 | 205 | 0.888889 | 1.82222245 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 42.4 | 0.0322 | NR | HCF96245.1 | 2026799 | g27043 | i0 | 63 | 0.395121951219512 | 27 | 10 | 39.5 | 0 | 174 | 94 | 674 | 700 | HCF96245.1 hypothetical protein [Verrucomicrobiota bacterium] | diamond | 81 | 42.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;