RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24786414 24786414 PRJNA575566_P_NODE_5000_length_468_cov_1.238329_g4803_i0 PRJNA575566 5000 468 1.238329 5.79537972 Patescibacteria group bacterium 2052139 Bacteria Bacteria 133 1.12e-32   NR MEK9166958.1 2052139 g4803 i0 47.6 0.92948717948718 145 67 88.5 3 415 2 877 1019 MEK9166958.1 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit [Patescibacteria group bacterium] diamond 435 133 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
28374330 28374330 PRJNA575566_P_NODE_26146_length_206_cov_0.882759_g25949_i0 PRJNA575566 26146 206 0.882759 1.81848354 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 42.7 0.0224   NR HUY25280.1 2973664 g25949 i0 46 0.728155339805825 50 24 68.4 1 11 151 254 303 HUY25280.1 IS3 family transposase [Candidatus Saccharimonadales bacterium] diamond 150 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;