RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA575566" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27269132 27269132 PRJNA575566_P_NODE_22783_length_217_cov_1.076923_g22586_i0 PRJNA575566 22783 217 1.076923 2.33692291 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 60.1 2.08e-8   NR XP_013760686.1 461836 g22586 i0 41.7 0.995391705069124 72 42 99.5 0 2 217 790 861 XP_013760686.1 white-brown-complex ABC transporter [Thecamonas trahens ATCC 50062] diamond 216 60.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29353319 29353319 PRJNA575566_P_NODE_29789_length_201_cov_0.914286_g29592_i0 PRJNA575566 29789 201 0.914286 1.83771486 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 50.4 4.15e-5   NR XP_013761166.1 461836 g29592 i0 42.6 0.701492537313433 47 27 70.1 0 13 153 196 242 XP_013761166.1 Na-Ca exchanger/integrin-beta4 [Thecamonas trahens ATCC 50062] diamond 141 50.4 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;