RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA573544" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA573544 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30742991 30742991 PRJNA573544_P_NODE_7554_length_244_cov_0.912281_g7536_i0 PRJNA573544 7554 244 0.912281 2.22596564 Extremus antarcticus 702011 Fungi Fungi 96.3 5e-21   NR KAK3057624.1 702011 g7536 i0 62.5 0.983606557377049 80 29 98.4 1 5 244 4 82 KAK3057624.1 transcriptional regulator opi1 [Extremus antarcticus] diamond 240 96.3 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Extremaceae Extremus Extremus antarcticus
31691366 31691366 PRJNA573544_P_NODE_6577_length_248_cov_0.891429_g6559_i0 PRJNA573544 6577 248 0.891429 2.21074392 Parastagonospora nodorum SN15 321614 Fungi Fungi 120 1.07e-29   NR XP_001794956.1 321614 g6559 i0 82.2 0.883064516129032 73 13 88.3 0 220 2 291 363 XP_001794956.1 hypothetical protein SNOG_04541 [Parastagonospora nodorum SN15] diamond 219 120 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Phaeosphaeriaceae Parastagonospora Parastagonospora nodorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;