RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA573544" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA573544 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28658713 28658713 PRJNA573544_P_NODE_4987_length_260_cov_0.930481_g4969_i0 PRJNA573544 4987 260 0.930481 2.4192506 Clostridia bacterium 2044939 Bacteria Bacteria 45.1 0.00339   NR MBQ8149526.1 2044939 g4969 i0 48.7 0.45 39 20 45 0 50 166 80 118 MBQ8149526.1 hypothetical protein [Clostridia bacterium] diamond 117 45.1 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
28974441 28974441 PRJNA573544_P_NODE_4708_length_267_cov_1.551546_g4690_i0 PRJNA573544 4708 267 1.551546 4.14262782 Micromonosporaceae bacterium 1873464 Bacteria Bacteria 44.7 0.0099   NR HEX6073767.1 1873464 g4690 i0 44.6 0.730337078651685 65 20 71.9 3 217 26 145 194 HEX6073767.1 thiolase family protein [Micromonosporaceae bacterium] diamond 195 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae   Micromonosporaceae bacterium
32797422 32797422 PRJNA573544_P_NODE_7020_length_246_cov_0.901734_g7002_i0 PRJNA573544 7020 246 0.901734 2.21826564 Candidatus Obscuribacter sp. 2711154 Bacteria Bacteria 164 2.0299999999999998e-47   NR HMY02784.1 2711154 g7002 i0 100 0.98780487804878 81 0 98.8 0 2 244 114 194 HMY02784.1 hypothetical protein [Candidatus Obscuribacter sp.] diamond 243 164 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Obscuribacterales Candidatus Obscuribacteraceae Candidatus Obscuribacter Candidatus Obscuribacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;