contig_metadata
9 rows where analysis = "diamond", bioproject = "PRJNA572587" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23511577 | 23511577 | PRJNA572587_P_NODE_7939_length_431_cov_1.641361_g7614_i0 | PRJNA572587 | 7939 | 431 | 1.641361 | 7.07426591 | Desulfopila sp. IMCC35 | 2212462 | Bacteria | Bacteria | 69.7 | 1.18e-10 | NR | WP_136814176.1 | 2569542 | g7614 | i0 | 72.9 | 0.334106728538283 | 48 | 13 | 33.4 | 0 | 158 | 15 | 1086 | 1133 | WP_136814176.1 isocitrate dehydrogenase kinase/phosphatase AceK regulatory subunit [Desulfopila sp. IMCC35006] | diamond | 144 | 69.7 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfocapsaceae | Desulfopila | Desulfopila sp. IMCC35006 | ||
| 24784903 | 24784903 | PRJNA572587_P_NODE_16640_length_280_cov_36.805195_g16312_i0 | PRJNA572587 | 16640 | 280 | 36.805195 | 103.054546 | Thermodesulfobacteriota bacterium | 2202153 | Bacteria | Bacteria | 105 | 3.669999999999999e-24 | NR | MEW6664108.1 | 2202153 | g16312 | i0 | 58.3 | 0.9 | 84 | 35 | 90 | 0 | 24 | 275 | 194 | 277 | MEW6664108.1 HsdR family type I site-specific deoxyribonuclease [Thermodesulfobacteriota bacterium] | diamond | 252 | 105 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteriota bacterium | ||||||
| 29321514 | 29321514 | PRJNA572587_P_NODE_35809_length_184_cov_4.237037_g35481_i0 | PRJNA572587 | 35809 | 184 | 4.237037 | 7.79614808 | Caldimicrobium sp. | 2024963 | Bacteria | Bacteria | 93.6 | 5.14e-21 | NR | NAZ30913.1 | 2024963 | g35481 | i0 | 93.6 | 0.766304347826087 | 47 | 3 | 76.6 | 0 | 2 | 142 | 273 | 319 | NAZ30913.1 tRNA pseudouridine(55) synthase TruB [Caldimicrobium sp.] | diamond | 141 | 93.6 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteria | Thermodesulfobacteriales | Thermodesulfobacteriaceae | Caldimicrobium | Caldimicrobium sp. | ||
| 29510908 | 29510908 | PRJNA572587_P_NODE_34970_length_186_cov_21.854015_g34642_i0 | PRJNA572587 | 34970 | 186 | 21.854015 | 40.6484679 | Thermodesulfobacterium commune | 1741 | Bacteria | Bacteria | 43.9 | 0.00335 | NR | WP_038062177.1 | 1741 | g34642 | i0 | 94.1 | 0.274193548387097 | 17 | 1 | 27.4 | 0 | 111 | 161 | 1 | 17 | WP_038062177.1 hypothetical protein [Thermodesulfobacterium commune] | diamond | 51 | 43.9 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteria | Thermodesulfobacteriales | Thermodesulfobacteriaceae | Thermodesulfobacterium | Thermodesulfobacterium commune | ||
| 31817829 | 31817829 | PRJNA572587_P_NODE_6837_length_470_cov_16.479810_g6513_i0 | PRJNA572587 | 6837 | 470 | 16.47981 | 77.455107 | Syntrophales bacterium | 2928017 | Bacteria | Bacteria | 55.8 | 1.09e-5 | NR | HUH65452.1 | 2928017 | g6513 | i0 | 43.5 | 2.55957446808511 | 62 | 35 | 39.6 | 0 | 267 | 452 | 163 | 224 | HUH65452.1 PAS domain S-box protein [Syntrophales bacterium] | diamond | 1203 | 55.8 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Syntrophia | Syntrophales | Syntrophales bacterium | ||||
| 31849474 | 31849474 | PRJNA572587_P_NODE_1237_length_1110_cov_44.342130_g1126_i0 | PRJNA572587 | 1237 | 1110 | 44.34213 | 492.197643 | Desulfocurvus vexinensis | 399548 | Bacteria | Bacteria | 55.1 | 8.87e-6 | NR | WP_028588107.1 | 399548 | g1126 | i0 | 60 | 0.362162162162162 | 35 | 14 | 9.5 | 0 | 994 | 1098 | 5 | 39 | WP_028588107.1 RNA recognition motif domain-containing protein [Desulfocurvus vexinensis] | diamond | 402 | 55.1 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfocurvus | Desulfocurvus vexinensis | ||
| 32197633 | 32197633 | PRJNA572587_P_NODE_12438_length_331_cov_1.741135_g12110_i0 | PRJNA572587 | 12438 | 331 | 1.741135 | 5.76315685 | Desulfobacteria bacterium | 3024420 | Bacteria | Bacteria | 57.8 | 9.69e-8 | NR | HEX3016161.1 | 3024420 | g12110 | i0 | 52.3 | 0.779456193353474 | 44 | 21 | 39.9 | 0 | 194 | 325 | 7 | 50 | HEX3016161.1 ribosomal protein S18-alanine N-acetyltransferase [Desulfobacteria bacterium] | diamond | 258 | 57.8 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacteria bacterium | |||||
| 32703072 | 32703072 | PRJNA572587_P_NODE_27220_length_214_cov_5.369697_g26892_i0 | PRJNA572587 | 27220 | 214 | 5.369697 | 11.49115158 | Desulfobacteria bacterium | 3024420 | Bacteria | Bacteria | 93.2 | 7.340000000000001e-21 | NR | HEX3015158.1 | 3024420 | g26892 | i0 | 80 | 0.771028037383178 | 55 | 11 | 77.1 | 0 | 184 | 20 | 15 | 69 | HEX3015158.1 phosphate ABC transporter permease subunit PstC [Desulfobacteria bacterium] | diamond | 165 | 93.2 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacteria bacterium | |||||
| 32797412 | 32797412 | PRJNA572587_P_NODE_36380_length_182_cov_18.165414_g36052_i0 | PRJNA572587 | 36380 | 182 | 18.165414 | 33.06105348 | Caldimicrobium sp. | 2024963 | Bacteria | Bacteria | 57.8 | 1.88e-8 | NR | MFN4132682.1 | 2024963 | g36052 | i0 | 77.4 | 0.510989010989011 | 31 | 7 | 51.1 | 0 | 86 | 178 | 3 | 33 | MFN4132682.1 RNA-guided endonuclease TnpB family protein [Caldimicrobium sp.] | diamond | 93 | 57.8 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Thermodesulfobacteria | Thermodesulfobacteriales | Thermodesulfobacteriaceae | Caldimicrobium | Caldimicrobium sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;