RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA572587" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA572587 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27504099 27504099 PRJNA572587_P_NODE_3143_length_739_cov_18.392754_g2883_i0 PRJNA572587 3143 739 18.392754 135.92245206 Rhabditida 6236 Nematoda Nematoda 75.1 2.67e-13   NR KAI3417563.1 36090 g2883 i0 47.6 0.990527740189445 63 33 25.6 0 610 422 49 111 KAI3417563.1 hypothetical protein GPALN_013283 [Globodera pallida] diamond 732 75.5 0.994701986754967 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
28766805 28766805 PRJNA572587_P_NODE_2827_length_779_cov_20.621918_g2581_i0 PRJNA572587 2827 779 20.621918 160.64474122 Metazoa 33208 Nematoda Nematoda 65.9 8.26e-10   NR KAH7725121.1 70226 g2581 i0 40.6 0.754813863928113 101 54 36.6 3 121 405 3 103 KAH7725121.1 glutaredoxin [Aphelenchoides avenae] diamond 588 66.2 0.995468277945619 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
29051192 29051192 PRJNA572587_P_NODE_23568_length_232_cov_9.256831_g23240_i0 PRJNA572587 23568 232 9.256831 21.47584792 Metazoa 33208 Nematoda Nematoda 102 6.88e-26   NR CDJ81636.1 6289 g23240 i0 83.3 12.6465517241379 54 9 69.8 0 19 180 86 139 CDJ81636.1 Glyoxalase bleomycin resistance protein dioxygenase domain containing protein [Haemonchus contortus] diamond 2934 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;