RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA572587" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5662848 5662848 PRJNA572587_P_NODE_46725_length_161_cov_3.196429_g46397_i0 PRJNA572587 46725 161 3.196429 5.14625069 Peredibacter 263370 Bacteria Bacteria 75.9 1.53e-14   NR WP_321389441.1 28202 g46397 i0 76.7 1.60248447204969 43 10 80.1 0 159 31 158 200 WP_321389441.1 hypothetical protein [Peredibacter starrii] diamond 258 76.3 0.99475753604194 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
28153556 28153556 PRJNA572587_P_NODE_31065_length_199_cov_11.213333_g30737_i0 PRJNA572587 31065 199 11.213333 22.31453267 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 53.5 3.17e-6   NR MEO5668519.1 3034175 g30737 i0 42.4 1.98994974874372 66 36 98 2 199 5 29 93 MEO5668519.1 hypothetical protein [Bdellovibrionota bacterium] diamond 396 53.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29573979 29573979 PRJNA572587_P_NODE_35310_length_185_cov_23.566176_g34982_i0 PRJNA572587 35310 185 23.566176 43.5974256 Bdellovibrionales bacterium GWB1_55_8 1797386 Bacteria Bacteria 67.4 2.98e-11   NR OFZ20096.1 1797386 g34982 i0 64.3 1.81621621621622 56 20 90.8 0 3 170 262 317 OFZ20096.1 MAG: hypothetical protein A2X94_09300 [Bdellovibrionales bacterium GWB1_55_8] diamond 336 67.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium GWB1_55_8
30061324 30061324 PRJNA572587_P_NODE_29331_length_205_cov_11.916667_g29003_i0 PRJNA572587 29331 205 11.916667 24.42916735 Bdellovibrio 958 Bacteria Bacteria 84 3.85e-19   NR WP_142697577.1 2220073 g29003 i0 68.4 2.50243902439024 57 18 83.4 0 195 25 45 101 WP_142697577.1 polyhydroxyalkanoic acid system family protein [Bdellovibrio sp. NC01] diamond 513 84 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
30269343 30269343 PRJNA572587_P_NODE_16072_length_286_cov_5.443038_g15744_i0 PRJNA572587 16072 286 5.443038 15.56708868 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 67 1.88e-10   NR HLD99388.1 3034175 g15744 i0 58.8 1.04895104895105 51 21 53.5 0 210 58 744 794 HLD99388.1 hypothetical protein [Bdellovibrionota bacterium] diamond 300 67 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31768190 31768190 PRJNA572587_P_NODE_7617_length_440_cov_200.370844_g7292_i0 PRJNA572587 7617 440 200.370844 881.6317136 Peredibacter 263370 Bacteria Bacteria 108 3.62e-24   NR WP_321394767.1 28202 g7292 i0 72.4 1.76590909090909 87 22 58 1 283 29 102 188 WP_321394767.1 TrkH family potassium uptake protein [Peredibacter starrii] diamond 777 109 0.990825688073395 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
31912821 31912821 PRJNA572587_P_NODE_18857_length_262_cov_3.497653_g18529_i0 PRJNA572587 18857 262 3.497653 9.16385086 Oligoflexales bacterium 2687297 Bacteria Bacteria 50.4 3.45e-5   NR MBF0443082.1 2687297 g18529 i0 34.3 0.767175572519084 67 25 55 1 118 261 51 117 MBF0443082.1 hypothetical protein [Oligoflexales bacterium] diamond 201 50.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
32545853 32545853 PRJNA572587_P_NODE_22019_length_240_cov_83.162304_g21691_i0 PRJNA572587 22019 240 83.162304 199.5895296 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 89 1.97e-18   NR WP_063205553.1 959 g21691 i0 50.7 2.7375 73 36 91.3 0 22 240 30 102 WP_063205553.1 replication restart helicase PriA [Bdellovibrio bacteriovorus] diamond 657 89 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;