RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA572587" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26699467 26699467 PRJNA572587_P_NODE_33421_length_191_cov_10.845070_g33093_i0 PRJNA572587 33421 191 10.84507 20.7140837 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 59.3 1.2e-8   NR KAL3792559.1 29204 g33093 i0 70.3 0.581151832460733 37 11 58.1 0 174 64 165 201 KAL3792559.1 hypothetical protein HJC23_005529 [Cyclotella cryptica] diamond 111 59.3 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
29069178 29069178 PRJNA572587_P_NODE_37448_length_179_cov_27.007692_g37120_i0 PRJNA572587 37448 179 27.007692 48.34376868 Navicula sp. 1923966 SAR_Eukaryotes SAR_Eukaryotes 64.7 4.24e-11   NR WPV72499.1 1923966 g37120 i0 73.8 0.70391061452514 42 9 67 1 24 143 35 76 WPV72499.1 putative LAGLIDADG homing endonuclease [Navicula sp.] diamond 126 64.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula sp.
29195440 29195440 PRJNA572587_P_NODE_19949_length_254_cov_1.917073_g19621_i0 PRJNA572587 19949 254 1.917073 4.86936542 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 51.2 4.51e-5   NR KAL3938522.1 3061772 g19621 i0 41.7 0.566929133858268 48 28 56.7 0 237 94 1275 1322 KAL3938522.1 MAG: hypothetical protein SGBAC_006589 [Bacillariaceae sp.] diamond 144 51.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
32482486 32482486 PRJNA572587_P_NODE_24179_length_229_cov_1.416667_g23851_i0 PRJNA572587 24179 229 1.416667 3.24416743 Cyclotella atomus 382360 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.043   NR KAL3770571.1 382360 g23851 i0 42.9 0.733624454148472 56 21 66.8 2 208 56 90 139 KAL3770571.1 hypothetical protein ACHAWO_000931 [Cyclotella atomus] diamond 168 42.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;