RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA572587" and tax_clade = "Caldisericota/Cryosericota group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Caldisericota/Cryosericota group · 3 ✖

bioproject 1

  • PRJNA572587 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28482723 28482723 PRJNA572587_P_NODE_29406_length_205_cov_5.243590_g29078_i0 PRJNA572587 29406 205 5.24359 10.7493595 Pseudomonadati 3379134 Bacteria Bacteria 50.8 2.92e-6   NR MCR4433944.1 2052147 g29078 i0 60.4 4.81463414634146 48 19 70.2 0 147 4 6 53 MCR4433944.1 hypothetical protein [Caldisericota bacterium] diamond 987 50.8 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota         Caldisericota bacterium
30395885 30395885 PRJNA572587_P_NODE_43953_length_165_cov_5.637931_g43625_i0 PRJNA572587 43953 165 5.637931 9.30258615 Caldisericota bacterium 2052147 Bacteria Bacteria 82.4 1.14e-16   NR MCR4428257.1 2052147 g43625 i0 63.6 4 55 20 100 0 165 1 103 157 MCR4428257.1 restriction endonuclease subunit S [Caldisericota bacterium] diamond 660 82.4 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota         Caldisericota bacterium
31406861 31406861 PRJNA572587_P_NODE_39396_length_174_cov_13.488000_g39068_i0 PRJNA572587 39396 174 13.488 23.46912 Caldisericia bacterium 2758719 Bacteria Bacteria 80.5 7.17e-16   NR HOJ16558.1 2758719 g39068 i0 71.9 0.982758620689655 57 15 96.6 1 173 6 211 267 HOJ16558.1 ATP-binding protein [Caldisericia bacterium] diamond 171 80.5 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;