RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28879443 28879443 PRJNA565778_S_NODE_27628_length_210_cov_2.676301_g27332_i0 PRJNA565778 27628 210 2.676301 5.6202321 Planctomycetota bacterium 2026780 Bacteria Bacteria 75.9 5.25e-14   NR HRJ77648.1 2026780 g27332 i0 90.2 0.585714285714286 41 4 58.6 0 198 76 774 814 HRJ77648.1 protein DpdF [Planctomycetota bacterium] diamond 123 75.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29858278 29858278 PRJNA565778_S_NODE_8591_length_368_cov_3.042296_g8295_i0 PRJNA565778 8591 368 3.042296 11.19564928 Phycisphaerales bacterium 2052180 Bacteria Bacteria 47.8 0.00213   NR MBY0309332.1 2052180 g8295 i0 56.4 0.448369565217391 55 18 44 2 29 190 22 71 MBY0309332.1 ankyrin repeat domain-containing protein [Phycisphaerales bacterium] diamond 165 47.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
31862950 31862950 PRJNA565778_S_NODE_37357_length_177_cov_2.507143_g37061_i0 PRJNA565778 37357 177 2.507143 4.43764311 Bacteria 2 Bacteria Bacteria 85.1 3.51e-19   NR MCI0458091.1 2052164 g37061 i0 69.2 4.72881355932203 52 16 88.1 0 1 156 83 134 MCI0458091.1 class I SAM-dependent methyltransferase [Gemmataceae bacterium] diamond 837 85.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;