RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA565778 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10762390 10762390 PRJNA565778_S_NODE_129_length_1424_cov_2.855804_g117_i0 PRJNA565778 129 1424 2.855804 40.66664896 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 274 2.07e-80   NR KAH9092426.1 100861 g117 i0 38.4 3.73946629213483 437 213 90.4 6 1 1287 319 707 KAH9092426.1 hypothetical protein LEN26_018391 [Aphanomyces euteiches] diamond 5325 274 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30142320 30142320 PRJNA565778_S_NODE_12472_length_310_cov_302.135531_g12176_i0 PRJNA565778 12472 310 302.135531 936.6201461 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 66.6 5.46e-12   NR XP_067823616.1 4779 g12176 i0 86.7 1.16129032258065 30 4 29 0 39 128 23 52 XP_067823616.1 uncharacterized protein CCR75_002949 [Bremia lactucae] diamond 360 66.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30647940 30647940 PRJNA565778_S_NODE_31353_length_196_cov_2.125786_g31057_i0 PRJNA565778 31353 196 2.125786 4.16654056 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.8e-4   NR OWZ00785.1 4795 g31057 i0 42.4 1.01020408163265 66 34 96.4 2 195 7 4 68 OWZ00785.1 Calcyphosin [Phytophthora megakarya] diamond 198 48.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;