RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29303582 29303582 PRJNA565778_S_NODE_13169_length_303_cov_2.785714_g12873_i0 PRJNA565778 13169 303 2.785714 8.44071342 root 1 Root_unresolved Root_unresolved 141 1.09e-36   NR MCB0744513.1 2026749 g12873 i0 65.7 2.96039603960396 99 34 98 0 298 2 223 321 MCB0744513.1 hypothetical protein [Ignavibacteriota bacterium] diamond 897 142 0.992957746478873 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
29763439 29763439 PRJNA565778_S_NODE_28251_length_207_cov_55.235294_g27955_i0 PRJNA565778 28251 207 55.235294 114.33705858 Ignavibacterium sp. 2651167 Bacteria Bacteria 82.4 1.69e-16   NR WP_348343998.1 2651167 g27955 i0 95.2 0.608695652173913 42 2 60.9 0 128 3 320 361 WP_348343998.1 IS30 family transposase, partial [Ignavibacterium sp.] diamond 126 82.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
32450958 32450958 PRJNA565778_S_NODE_11979_length_316_cov_89.896057_g11683_i0 PRJNA565778 11979 316 89.896057 284.07154012 Ignavibacterium sp. 2651167 Bacteria Bacteria 119 9.66e-30   NR WP_348343998.1 2651167 g11683 i0 98.4 0.579113924050633 61 1 57.9 0 280 98 9 69 WP_348343998.1 IS30 family transposase, partial [Ignavibacterium sp.] diamond 183 119 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;