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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15861091 15861091 PRJNA565778_S_NODE_4353_length_490_cov_91.792494_g4131_i0 PRJNA565778 4353 490 91.792494 449.7832206 Branchiostoma belcheri 7741 Chordata Chordata 167 2.27e-50   NR XP_019635034.1 7741 g4131 i0 84.9 2.81020408163265 93 14 56.9 0 435 157 11 103 XP_019635034.1 PREDICTED: 60S ribosomal protein L37a [Branchiostoma belcheri] diamond 1377 167 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
18410094 18410094 PRJNA565778_S_NODE_1875_length_679_cov_4.649533_g1747_i0 PRJNA565778 1875 679 4.649533 31.57032907 Metazoa 33208 Chordata Chordata 247 9.86e-73   NR XP_019619062.1 7741 g1747 i0 58 24.79970544919 205 82 89.7 2 611 3 6 208 XP_019619062.1 PREDICTED: pre-mRNA-splicing factor SYF1-like [Branchiostoma belcheri] diamond 16839 249 0.991967871485944 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
23510544 23510544 PRJNA565778_S_NODE_1759_length_695_cov_4.516717_g1639_i0 PRJNA565778 1759 695 4.516717 31.39118315 Chordata 7711 Chordata Chordata 248 6.88e-80   NR XP_067886592.1 7792 g1639 i0 67.6 16.1223021582734 182 58 78.6 1 32 577 11 191 XP_067886592.1 60S ribosomal protein L17 isoform X1 [Heterodontus francisci] diamond 11205 248 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Heterodontiformes Heterodontidae Heterodontus Heterodontus francisci
27743166 27743166 PRJNA565778_S_NODE_4604_length_479_cov_118.800905_g4378_i0 PRJNA565778 4604 479 118.800905 569.05633495 Clavelina lepadiformis 159417 Chordata Chordata 48.9 0.00268   NR CAK8684176.1 159417 g4378 i0 44.8 0.363256784968685 58 31 35.7 1 358 188 471 528 CAK8684176.1 unnamed protein product [Clavelina lepadiformis] diamond 174 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
28184667 28184667 PRJNA565778_S_NODE_32406_length_192_cov_6.425806_g32110_i0 PRJNA565778 32406 192 6.425806 12.33754752 Pseudorca crassidens 82174 Chordata Chordata 47.8 3.16e-4   NR XP_067579078.1 82174 g32110 i0 51.9 0.8125 52 24 79.7 1 153 1 142 193 XP_067579078.1 LINE-1 type transposase domain-containing protein 1 [Pseudorca crassidens] diamond 156 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Pseudorca Pseudorca crassidens
28721760 28721760 PRJNA565778_S_NODE_16767_length_270_cov_52.510730_g16471_i0 PRJNA565778 16767 270 52.51073 141.778971 Pelobates cultripes 61616 Chordata Chordata 93.6 7.24e-20   NR CAH2223336.1 61616 g16471 i0 62.2 5.75555555555556 74 28 82.2 0 234 13 1472 1545 CAH2223336.1 multidrug resistance-associated 5-like [Pelobates cultripes] diamond 1554 93.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes
28892998 28892998 PRJNA565778_S_NODE_16028_length_276_cov_5.577406_g15732_i0 PRJNA565778 16028 276 5.577406 15.39364056 Phlebobranchia 7716 Chordata Chordata 62.4 5.47e-9   NR XP_002125657.1 7719 g15732 i0 55.6 1.46739130434783 45 20 48.9 0 101 235 45 89 XP_002125657.1 nuclear inhibitor of protein phosphatase 1-like [Ciona intestinalis] diamond 405 62.8 0.993630573248408 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
29903645 29903645 PRJNA565778_S_NODE_28091_length_208_cov_3.461988_g27795_i0 PRJNA565778 28091 208 3.461988 7.20093504 root 1 Root_unresolved Root_unresolved 113 3.73e-27   NR AAA39757.1 10090 g27795 i0 90 27.6923076923077 60 6 86.5 0 20 199 37 96 AAA39757.1 pol protein, partial [Mus musculus] diamond 5760 113 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30914733 30914733 PRJNA565778_S_NODE_33414_length_189_cov_2.052632_g33118_i0 PRJNA565778 33414 189 2.052632 3.87947448 root 1 Root_unresolved Root_unresolved 97.4 1.03e-21   NR XP_030109804.2 10090 g33118 i0 100 8.55555555555556 49 0 77.8 0 10 156 78 126 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 1617 97.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31167037 31167037 PRJNA565778_S_NODE_10795_length_332_cov_2.515254_g10499_i0 PRJNA565778 10795 332 2.515254 8.35064328 Metazoa 33208 Chordata Chordata 128 4.3899999999999996e-32   NR XP_039766802.1 9258 g10499 i0 74.5 39.1897590361446 98 23 86.7 1 289 2 388 485 XP_039766802.1 uncharacterized protein LOC100079219 [Ornithorhynchus anatinus] diamond 13011 129 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
31736456 31736456 PRJNA565778_S_NODE_19617_length_250_cov_5.938967_g19321_i0 PRJNA565778 19617 250 5.938967 14.8474175 Canidae 9608 Chordata Chordata 55.8 1.01e-6   NR BAA25253.1 9615 g19321 i0 43.6 5.232 55 28 66 1 217 53 884 935 BAA25253.1 unnamed protein product [Canis lupus familiaris] diamond 1308 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
32134390 32134390 PRJNA565778_S_NODE_14978_length_285_cov_4.266129_g14682_i0 PRJNA565778 14978 285 4.266129 12.15846765 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 45.4 0.00136   NR CAI9152128.1 3082113 g14682 i0 72.4 0.305263157894737 29 8 30.5 0 35 121 51 79 CAI9152128.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 87 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
32274691 32274691 PRJNA565778_S_NODE_41478_length_157_cov_3.350000_g41182_i0 PRJNA565778 41478 157 3.35 5.2595 Mammalia 40674 Chordata Chordata 45.4 5.53e-4   NR KAF0875303.1 9678 g41182 i0 57.5 3.05732484076433 40 14 70.7 1 4 114 96 135 KAF0875303.1 LORF2 protein, partial [Crocuta crocuta] diamond 480 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
32514268 32514268 PRJNA565778_S_NODE_2979_length_571_cov_4.494382_g2801_i0 PRJNA565778 2979 571 4.494382 25.66292122 Phyllostomus discolor 89673 Chordata Chordata 56.2 6.39e-6   NR KAF6131092.1 89673 g2801 i0 41.4 0.457092819614711 87 42 41 3 206 439 116 202 KAF6131092.1 hypothetical protein HJG60_007993 [Phyllostomus discolor] diamond 261 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;