RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA565778 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4385860 4385860 PRJNA565778_S_NODE_34024_length_187_cov_3.246667_g33728_i0 PRJNA565778 34024 187 3.246667 6.07126729 FCB group 1783270 Bacteria Bacteria 109 4.4e-26   NR NPU90251.1 1871331 g33728 i0 96.4 5.3903743315508 56 2 89.8 0 18 185 459 514 NPU90251.1 site-specific DNA-methyltransferase [Fervidobacterium sp.] diamond 1008 110 0.990909090909091 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
29321486 29321486 PRJNA565778_S_NODE_10189_length_340_cov_14.023102_g9893_i0 PRJNA565778 10189 340 14.023102 47.6785468 Deinococcus soli (ex Cha et al. 2 1309411 Bacteria Bacteria 52.8 3.42e-5   NR WP_309855075.1 1309411 g9893 i0 34.7 0.838235294117647 95 61 82.9 1 284 3 154 248 WP_309855075.1 TraC family protein [Deinococcus soli (ex Cha et al. 2016)] diamond 285 52.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus soli (ex Cha et al. 2016)
30364288 30364288 PRJNA565778_S_NODE_38632_length_172_cov_6.400000_g38336_i0 PRJNA565778 38632 172 6.4 11.008 Fervidobacterium sp. 1871331 Bacteria Bacteria 83.2 2.74e-18   NR MDM7321174.1 1871331 g38336 i0 89.1 0.802325581395349 46 5 80.2 0 138 1 92 137 MDM7321174.1 hypothetical protein [Fervidobacterium sp.] diamond 138 83.2 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;