RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA565778 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24784646 24784646 PRJNA565778_S_NODE_4800_length_471_cov_4.002304_g4570_i0 PRJNA565778 4800 471 4.002304 18.85085184 Caviibacter abscessus 1766719 Bacteria Bacteria 274 5.659999999999999e-87   NR WP_068268925.1 1766719 g4570 i0 83.4 1 157 26 100 0 1 471 372 528 WP_068268925.1 PTS transporter subunit EIIC [Caviibacter abscessus] diamond 471 274 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Caviibacter Caviibacter abscessus
28532401 28532401 PRJNA565778_S_NODE_20247_length_246_cov_3.416268_g19951_i0 PRJNA565778 20247 246 3.416268 8.40401928 Leptotrichiaceae bacterium 2782225 Bacteria Bacteria 150 1.31e-40   NR MBP7101574.1 2782225 g19951 i0 100 0.890243902439024 73 0 89 0 28 246 150 222 MBP7101574.1 ribonucleoside-diphosphate reductase subunit alpha [Leptotrichiaceae bacterium] diamond 219 150 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae   Leptotrichiaceae bacterium
31027534 31027534 PRJNA565778_S_NODE_32715_length_191_cov_4.525974_g32419_i0 PRJNA565778 32715 191 4.525974 8.64461034 Fusobacterium 848 Bacteria Bacteria 84 5.59e-17   NR WP_338982577.1 848 g32419 i0 71.2 0.816753926701571 52 15 81.7 0 158 3 603 654 WP_338982577.1 MULTISPECIES: N-6 DNA methylase [Fusobacterium] diamond 156 84 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium  
31831320 31831320 PRJNA565778_S_NODE_30817_length_198_cov_1.863354_g30521_i0 PRJNA565778 30817 198 1.863354 3.68944092 Bacteria 2 Bacteria Bacteria 51.2 2.03e-5   NR WP_276797368.1 849 g30521 i0 45.5 3 66 34 97 1 193 2 246 311 WP_276797368.1 DNA (cytosine-5-)-methyltransferase [Fusobacterium gonidiaformans] diamond 594 51.6 0.992248062015504 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;