RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Sar · 15 ✖

bioproject 1

  • PRJNA565778 · 15 ✖

analysis 1

  • diamond · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10762390 10762390 PRJNA565778_S_NODE_129_length_1424_cov_2.855804_g117_i0 PRJNA565778 129 1424 2.855804 40.66664896 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 274 2.07e-80   NR KAH9092426.1 100861 g117 i0 38.4 3.73946629213483 437 213 90.4 6 1 1287 319 707 KAH9092426.1 hypothetical protein LEN26_018391 [Aphanomyces euteiches] diamond 5325 274 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12037173 12037173 PRJNA565778_S_NODE_1550_length_725_cov_2.648256_g1443_i0 PRJNA565778 1550 725 2.648256 19.199856 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 346 9.689999999999998e-117   NR CAD8176655.1 43137 g1443 i0 67.1 0.968275862068966 234 76 96.4 1 703 5 6 239 CAD8176655.1 unnamed protein product [Paramecium octaurelia] diamond 702 346 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
26826488 26826488 PRJNA565778_S_NODE_30781_length_198_cov_2.664596_g30485_i0 PRJNA565778 30781 198 2.664596 5.27590008 Blastocystis sp. Blastoise 3128533 SAR_Eukaryotes SAR_Eukaryotes 51.2 2.09e-5   NR KAK8811461.1 3128533 g30485 i0 48.8 0.651515151515151 43 22 65.2 0 69 197 282 324 KAK8811461.1 hypothetical protein WA158_003195 [Blastocystis sp. Blastoise] diamond 129 51.2 1 Eukaryota Sar     Bigyra Opalinata Blastocystidae Blastocystis Blastocystis sp. Blastoise
29890108 29890108 PRJNA565778_S_NODE_9091_length_359_cov_2.645963_g8795_i0 PRJNA565778 9091 359 2.645963 9.49900717 Symbiodinium sp. KB8 230985 SAR_Eukaryotes SAR_Eukaryotes 135 4.859999999999999e-37   NR CAE7887481.1 230985 g8795 i0 53.4 0.986072423398329 118 51 97.8 2 8 358 100 214 CAE7887481.1 Capsl [Symbiodinium sp. KB8] diamond 354 135 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. KB8
30124480 30124480 PRJNA565778_S_NODE_43172_length_150_cov_1.566372_g42876_i0 PRJNA565778 43172 150 1.566372 2.349558 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47.4 2.39e-4   NR CAE7803942.1 2951 g42876 i0 52.6 3.84 38 18 76 0 119 6 267 304 CAE7803942.1 unnamed protein product [Symbiodinium microadriaticum] diamond 576 47.4 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium microadriaticum
30142320 30142320 PRJNA565778_S_NODE_12472_length_310_cov_302.135531_g12176_i0 PRJNA565778 12472 310 302.135531 936.6201461 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 66.6 5.46e-12   NR XP_067823616.1 4779 g12176 i0 86.7 1.16129032258065 30 4 29 0 39 128 23 52 XP_067823616.1 uncharacterized protein CCR75_002949 [Bremia lactucae] diamond 360 66.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30205595 30205595 PRJNA565778_S_NODE_28492_length_206_cov_8.591716_g28196_i0 PRJNA565778 28492 206 8.591716 17.69893496 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 51.6 1.63e-5   NR GKY91383.1 2872254 g28196 i0 65.8 0.553398058252427 38 13 55.3 0 204 91 298 335 GKY91383.1 hypothetical protein MPSEU_000110600 [Mayamaea pseudoterrestris] diamond 114 51.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
30427476 30427476 PRJNA565778_S_NODE_15953_length_277_cov_2.275000_g15657_i0 PRJNA565778 15953 277 2.275 6.30175 Cladocopium goreaui 2562237 SAR_Eukaryotes SAR_Eukaryotes 98.2 1.75e-21   NR CAL1140818.1 2562237 g15657 i0 52.8 0.963898916967509 89 42 96.4 0 9 275 194 282 CAL1140818.1 unnamed protein product [Cladocopium goreaui] diamond 267 98.2 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Cladocopium Cladocopium goreaui
30647940 30647940 PRJNA565778_S_NODE_31353_length_196_cov_2.125786_g31057_i0 PRJNA565778 31353 196 2.125786 4.16654056 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.8e-4   NR OWZ00785.1 4795 g31057 i0 42.4 1.01020408163265 66 34 96.4 2 195 7 4 68 OWZ00785.1 Calcyphosin [Phytophthora megakarya] diamond 198 48.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
30837791 30837791 PRJNA565778_S_NODE_8834_length_363_cov_10.435583_g8538_i0 PRJNA565778 8834 363 10.435583 37.88116629 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 83.2 1.01e-17   NR KAJ1426609.1 483371 g8538 i0 88.7 0.43801652892562 53 5 43 1 36 191 52 104 KAJ1426609.1 ribosomal L29 protein-domain-containing protein [Ochromonadaceae sp. CCMP2298] diamond 159 83.2 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
31641605 31641605 PRJNA565778_S_NODE_1016_length_839_cov_3.068579_g941_i0 PRJNA565778 1016 839 3.068579 25.74537781 Suessiales 89954 SAR_Eukaryotes SAR_Eukaryotes 135 7.23e-34   NR CAE8676712.1 89957 g941 i0 34.4 3.14660309892729 218 135 75.4 3 646 14 32 248 CAE8676712.1 unnamed protein product, partial [Polarella glacialis] diamond 2640 135 1 Eukaryota Sar     Dinophyceae Suessiales Suessiaceae Polarella Polarella glacialis
31881000 31881000 PRJNA565778_S_NODE_15577_length_280_cov_3.473251_g15281_i0 PRJNA565778 15577 280 3.473251 9.7251028 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 68.6 2.99e-11   NR KRX01349.1 266149 g15281 i0 50.9 5.11071428571429 53 26 56.8 0 39 197 240 292 KRX01349.1 hypothetical protein PPERSA_01252 [Pseudocohnilembus persalinus] diamond 1431 68.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
31881005 31881005 PRJNA565778_S_NODE_27477_length_210_cov_165.855491_g27181_i0 PRJNA565778 27477 210 165.855491 348.2965311 Cryptosporidium bovis 310047 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0176   NR XP_067181760.1 310047 g27181 i0 41.9 0.885714285714286 62 30 80 2 200 33 359 420 XP_067181760.1 interaptin [Cryptosporidium bovis] diamond 186 43.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium bovis
32134388 32134388 PRJNA565778_S_NODE_13018_length_304_cov_165.056180_g12722_i0 PRJNA565778 13018 304 165.05618 501.7707872 Tribonema minus 303371 SAR_Eukaryotes SAR_Eukaryotes 50.1 7.73e-5   NR KAG5179691.1 303371 g12722 i0 77.8 0.266447368421053 27 6 26.6 0 265 185 128 154 KAG5179691.1 hypothetical protein JKP88DRAFT_215336 [Tribonema minus] diamond 81 50.1 1 Eukaryota Sar     Xanthophyceae Tribonematales Tribonemataceae Tribonema Tribonema minus
32432860 32432860 PRJNA565778_S_NODE_26159_length_216_cov_2.787709_g25863_i0 PRJNA565778 26159 216 2.787709 6.02145144 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 75.1 9.98e-14   NR YP_740803.1 5905 g25863 i0 63.5 4.33333333333333 52 19 72.2 0 41 196 330 381 YP_740803.1 NADH dehydrogenase subunit 4 [Tetrahymena paravorax] diamond 936 75.5 0.994701986754967 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;