RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA565778" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA565778 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29069157 29069157 PRJNA565778_S_NODE_26628_length_214_cov_3.423729_g26332_i0 PRJNA565778 26628 214 3.423729 7.32678006 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 62.8 1.9e-9   NR KAJ3439077.1 1746091 g26332 i0 48.6 1.03738317757009 74 33 96.7 1 3 209 13 86 KAJ3439077.1 sequestosome-1 [Anaeramoeba flamelloides] diamond 222 62.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
30490280 30490280 PRJNA565778_S_NODE_14093_length_293_cov_3.906250_g13797_i0 PRJNA565778 14093 293 3.90625 11.4453125 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 125 4.559999999999999e-31   NR KAJ3430785.1 1746091 g13797 i0 63.9 0.993174061433447 97 35 99.3 0 2 292 401 497 KAJ3430785.1 copine [Anaeramoeba flamelloides] diamond 291 125 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;