RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA565584" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565584 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28184522 28184522 PRJNA565584_P_NODE_136226_length_271_cov_1.767677_g135074_i0 PRJNA565584 136226 271 1.767677 4.79040467 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 81.3 3.69e-16   NR MFA5505677.1 3107663 g135074 i0 66.1 0.686346863468635 62 21 68.6 0 191 6 2 63 MFA5505677.1 hypothetical protein [Vulcanimicrobiota bacterium] diamond 186 81.3 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29826530 29826530 PRJNA565584_P_NODE_148011_length_263_cov_2.373684_g146859_i0 PRJNA565584 148011 263 2.373684 6.24278892 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 83.2 2.78e-16   NR MFA5508923.1 3107663 g146859 i0 45.7 2.77186311787072 81 36 92.4 2 5 247 423 495 MFA5508923.1 VIT domain-containing protein [Vulcanimicrobiota bacterium] diamond 729 83.2 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30616445 30616445 PRJNA565584_P_NODE_27193_length_592_cov_1.603083_g26052_i0 PRJNA565584 27193 592 1.603083 9.49025136 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 210 1.25e-61   NR HYM30215.1 2952917 g26052 i0 53.3 3.98817567567568 195 89 98.8 2 6 590 251 443 HYM30215.1 3-(methylthio)propionyl-CoA ligase [Candidatus Cybelea sp.] diamond 2361 210 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
31059114 31059114 PRJNA565584_P_NODE_111635_length_287_cov_1.439252_g110483_i0 PRJNA565584 111635 287 1.439252 4.13065324 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 43.1 0.0464   NR MFA5503970.1 3107663 g110483 i0 32.2 0.940766550522648 90 55 89.9 2 259 2 468 555 MFA5503970.1 ATP-dependent helicase C-terminal domain-containing protein [Vulcanimicrobiota bacterium] diamond 270 43.1 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
31722787 31722787 PRJNA565584_P_NODE_163597_length_253_cov_1.711111_g162445_i0 PRJNA565584 163597 253 1.711111 4.32911083 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 56.6 5.14e-7   NR MFA7480872.1 3107663 g162445 i0 44.7 2.01581027667984 85 29 99.6 3 252 1 171 238 MFA7480872.1 pilus assembly PilX N-terminal domain-containing protein [Vulcanimicrobiota bacterium] diamond 510 56.6 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;