RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA565584" and tax_phylum = "Candidatus Blackallbacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Blackallbacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA565584 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26744527 26744527 PRJNA565584_P_NODE_178481_length_249_cov_0.875000_g177329_i0 PRJNA565584 178481 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 54.3 3.39e-6   NR PIQ23380.1 2014262 g177329 i0 31.7 2.85542168674699 82 49 98.8 2 248 3 134 208 PIQ23380.1 MAG: hypothetical protein COW64_24475, partial [bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26] diamond 711 54.3 1 Bacteria Bacteria candidate phyla   Candidatus Blackallbacteria         bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26
32387307 32387307 PRJNA565584_P_NODE_197759_length_245_cov_0.895349_g196607_i0 PRJNA565584 197759 245 0.895349 2.19360505 bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_5 2014262 Bacteria Bacteria 119 1.18e-29   NR PIQ25581.1 2014262 g196607 i0 70.7 1.00408163265306 82 23 99.2 1 2 244 182 263 PIQ25581.1 MAG: hypothetical protein COW64_14605 [bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26] diamond 246 119 1 Bacteria Bacteria candidate phyla   Candidatus Blackallbacteria         bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26
32685037 32685037 PRJNA565584_P_NODE_132180_length_274_cov_1.343284_g131028_i0 PRJNA565584 132180 274 1.343284 3.68059816 Pseudomonadati 3379134 Bacteria Bacteria 115 9.55e-28   NR PIQ27180.1 2014262 g131028 i0 60 5.97810218978102 90 34 98.5 2 2 271 138 225 PIQ27180.1 MAG: hypothetical protein COW64_08175 [bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26] diamond 1638 116 0.991379310344828 Bacteria Bacteria candidate phyla   Candidatus Blackallbacteria         bacterium (Candidatus Blackallbacteria) CG18_big_fil_WC_8_21_14_2_50_49_26

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;