RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA565584" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 24 ✖

bioproject 1

  • PRJNA565584 · 24 ✖

analysis 1

  • diamond · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3106843 3106843 PRJNA565584_P_NODE_192843_length_246_cov_0.890173_g191691_i0 PRJNA565584 192843 246 0.890173 2.18982558 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 166 2.0999999999999998e-47   NR WP_047383178.1 1340502 g191691 i0 100 0.98780487804878 81 0 98.8 0 245 3 157 237 WP_047383178.1 amidohydrolase [Cetobacterium sp. ZWU0022] diamond 243 166 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
4383184 4383184 PRJNA565584_P_NODE_174424_length_250_cov_0.870056_g173272_i0 PRJNA565584 174424 250 0.870056 2.17514 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 163 1.81e-47   NR WP_294093991.1 527638 g173272 i0 97.6 3.936 82 2 98.4 0 2 247 98 179 WP_294093991.1 electron transfer flavoprotein subunit alpha/FixB family protein [uncultured Cetobacterium sp.] diamond 984 163 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
4385345 4385345 PRJNA565584_P_NODE_90484_length_312_cov_1.610879_g89332_i0 PRJNA565584 90484 312 1.610879 5.02594248 unclassified Cetobacterium 2630983 Bacteria Bacteria 211 8.24e-64   NR WP_047382423.1 2630983 g89332 i0 100 0.990384615384615 103 0 99 0 310 2 85 187 WP_047382423.1 MULTISPECIES: glutathione ABC transporter substrate-binding protein [unclassified Cetobacterium] diamond 309 211 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
5659520 5659520 PRJNA565584_P_NODE_177845_length_249_cov_0.875000_g176693_i0 PRJNA565584 177845 249 0.875 2.17875 unclassified Cetobacterium 2630983 Bacteria Bacteria 166 4.29e-49   NR WP_047380571.1 2630983 g176693 i0 100 1 83 0 100 0 249 1 100 182 WP_047380571.1 MULTISPECIES: bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD [unclassified Cetobacterium] diamond 249 166 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
12036109 12036109 PRJNA565584_P_NODE_45410_length_443_cov_1.586486_g44259_i0 PRJNA565584 45410 443 1.586486 7.02813298 Cetobacterium 180162 Bacteria Bacteria 281 3.17e-93   NR MEG1365337.1 2071632 g44259 i0 96.6 1.99097065462754 147 5 99.5 0 2 442 8 154 MEG1365337.1 ABC transporter ATP-binding protein [Cetobacterium sp.] diamond 882 283 0.992932862190813 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.
22812625 22812625 PRJNA565584_P_NODE_76718_length_339_cov_1.736842_g75567_i0 PRJNA565584 76718 339 1.736842 5.88789438 unclassified Cetobacterium 2630983 Bacteria Bacteria 224 1.09e-70   NR WP_047382551.1 2630983 g75567 i0 99.1 1 113 1 100 0 1 339 34 146 WP_047382551.1 MULTISPECIES: 3-deoxy-7-phosphoheptulonate synthase [unclassified Cetobacterium] diamond 339 224 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
26952621 26952621 PRJNA565584_P_NODE_139002_length_269_cov_2.178571_g137850_i0 PRJNA565584 139002 269 2.178571 5.86035599 Fusobacterium sp. 68766 Bacteria Bacteria 48.9 3.5e-4   NR WP_330061876.1 68766 g137850 i0 57.6 0.368029739776952 33 14 36.8 0 252 154 631 663 WP_330061876.1 SEL1-like repeat protein [Fusobacterium sp.] diamond 99 48.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
27680021 27680021 PRJNA565584_P_NODE_71364_length_352_cov_1.093190_g70213_i0 PRJNA565584 71364 352 1.09319 3.8480288 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 240 1.1900000000000001e-77   NR WP_294095125.1 527638 g70213 i0 100 0.997159090909091 117 0 99.7 0 351 1 58 174 WP_294095125.1 Rpn family recombination-promoting nuclease/putative transposase [uncultured Cetobacterium sp.] diamond 351 240 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
28198296 28198296 PRJNA565584_P_NODE_144706_length_266_cov_0.943005_g143554_i0 PRJNA565584 144706 266 0.943005 2.5083933 Bacteria 2 Bacteria Bacteria 48.9 2.62e-4   NR WP_026737426.1 157692 g143554 i0 31.4 1.80451127819549 86 52 97 2 7 264 155 233 WP_026737426.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein [Pseudoleptotrichia goodfellowii] diamond 480 49.3 0.991886409736308 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
28974297 28974297 PRJNA565584_P_NODE_186088_length_247_cov_0.885057_g184936_i0 PRJNA565584 186088 247 0.885057 2.18609079 unclassified Cetobacterium 2630983 Bacteria Bacteria 157 2.37e-46   NR WP_047382053.1 2630983 g184936 i0 100 0.898785425101215 74 0 89.9 0 2 223 140 213 WP_047382053.1 MULTISPECIES: flavodoxin family protein [unclassified Cetobacterium] diamond 222 157 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
29037516 29037516 PRJNA565584_P_NODE_147268_length_264_cov_1.450262_g146116_i0 PRJNA565584 147268 264 1.450262 3.82869168 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 134 2.06e-34   NR WP_294094599.1 527638 g146116 i0 91.8 0.965909090909091 85 7 96.6 0 256 2 1 85 WP_294094599.1 ribonuclease J [uncultured Cetobacterium sp.] diamond 255 134 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
29163833 29163833 PRJNA565584_P_NODE_158789_length_256_cov_2.245902_g157637_i0 PRJNA565584 158789 256 2.245902 5.74950912 Propionigenium maris 45622 Bacteria Bacteria 167 2.01e-47   NR WP_281833469.1 45622 g157637 i0 98.8 0.99609375 85 1 99.6 0 2 256 181 265 WP_281833469.1 sodium-dependent transporter [Propionigenium maris] diamond 255 167 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium Propionigenium maris
29921551 29921551 PRJNA565584_P_NODE_117391_length_283_cov_1.980952_g116239_i0 PRJNA565584 117391 283 1.980952 5.60609416 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 171 6e-51   NR WP_052191600.1 1340502 g116239 i0 92.6 0.996466431095406 94 7 99.6 0 2 283 28 121 WP_052191600.1 RluA family pseudouridine synthase [Cetobacterium sp. ZWU0022] diamond 282 171 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
30016298 30016298 PRJNA565584_P_NODE_180011_length_248_cov_2.291429_g178859_i0 PRJNA565584 180011 248 2.291429 5.68274392 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 160 1.97e-43   NR WP_047384907.1 1340502 g178859 i0 100 0.991935483870968 82 0 99.2 0 247 2 662 743 WP_047384907.1 hypothetical protein [Cetobacterium sp. ZWU0022] diamond 246 160 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
30142155 30142155 PRJNA565584_P_NODE_133632_length_273_cov_1.460000_g132480_i0 PRJNA565584 133632 273 1.46 3.9858 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 176 4.91e-52   NR WP_047393843.1 1339239 g132480 i0 100 0.989010989010989 90 0 98.9 0 2 271 223 312 WP_047393843.1 SEC-C metal-binding domain-containing protein [Cetobacterium sp. ZOR0034] diamond 270 176 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
30156013 30156013 PRJNA565584_P_NODE_60852_length_381_cov_1.129870_g59701_i0 PRJNA565584 60852 381 1.12987 4.3048047 Cetobacterium 180162 Bacteria Bacteria 45.4 0.0197   NR WP_291941244.1 2071632 g59701 i0 42.3 1.11811023622047 52 29 40.2 1 174 22 864 915 WP_291941244.1 autotransporter outer membrane beta-barrel domain-containing protein [Cetobacterium sp.] diamond 426 45.8 0.991266375545852 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.
30395717 30395717 PRJNA565584_P_NODE_138673_length_270_cov_0.893401_g137521_i0 PRJNA565584 138673 270 0.893401 2.4121827 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 177 4.11e-53   NR WP_047394886.1 1339239 g137521 i0 100 0.988888888888889 89 0 98.9 0 3 269 12 100 WP_047394886.1 AAA family ATPase, partial [Cetobacterium sp. ZOR0034] diamond 267 177 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
30774676 30774676 PRJNA565584_P_NODE_222514_length_226_cov_2.176471_g221362_i0 PRJNA565584 222514 226 2.176471 4.91882446 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 48.5 2.68e-4   NR WP_047383591.1 1340502 g221362 i0 44.4 1.18141592920354 45 25 59.7 0 91 225 4 48 WP_047383591.1 glycosyltransferase [Cetobacterium sp. ZWU0022] diamond 267 48.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
31184902 31184902 PRJNA565584_P_NODE_138075_length_270_cov_1.558376_g136923_i0 PRJNA565584 138075 270 1.558376 4.2076152 Cetobacterium 180162 Bacteria Bacteria 115 5.53e-32   NR WP_291941138.1 180162 g136923 i0 90.2 0.566666666666667 51 5 56.7 0 155 3 1 51 WP_291941138.1 MULTISPECIES: rubredoxin [Cetobacterium] diamond 153 115 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
31280023 31280023 PRJNA565584_P_NODE_205695_length_243_cov_0.905882_g204543_i0 PRJNA565584 205695 243 0.905882 2.20129326 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 163 3.75e-46   NR WP_047384609.1 1340502 g204543 i0 100 1 81 0 100 0 243 1 249 329 WP_047384609.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Cetobacterium sp. ZWU0022] diamond 243 163 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
31483791 31483791 PRJNA565584_P_NODE_208976_length_242_cov_0.911243_g207824_i0 PRJNA565584 208976 242 0.911243 2.20520806 Cetobacterium 180162 Bacteria Bacteria 150 1.89e-40   NR WP_297406435.1 527638 g207824 i0 100 1.98347107438017 80 0 99.2 0 240 1 243 322 WP_297406435.1 GTPase HflX [uncultured Cetobacterium sp.] diamond 480 150 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
31785937 31785937 PRJNA565584_P_NODE_157557_length_257_cov_1.673913_g156405_i0 PRJNA565584 157557 257 1.673913 4.30195641 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 137 2.88e-40   NR WP_294095922.1 527638 g156405 i0 97.4 0.88715953307393 76 2 88.7 0 228 1 1 76 WP_294095922.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 228 137 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
32229287 32229287 PRJNA565584_P_NODE_171538_length_250_cov_1.435028_g170386_i0 PRJNA565584 171538 250 1.435028 3.58757 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 156 6.7599999999999985e-47   NR WP_047382959.1 1340502 g170386 i0 95.2 0.996 83 4 99.6 0 249 1 51 133 WP_047382959.1 Dps family protein [Cetobacterium sp. ZWU0022] diamond 249 156 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
32514098 32514098 PRJNA565584_P_NODE_119879_length_282_cov_1.191388_g118727_i0 PRJNA565584 119879 282 1.191388 3.35971416 Cetobacterium sp. NK 2071632 Bacteria Bacteria 179 2.02e-56   NR WP_256690022.1 2993530 g118727 i0 89.2 0.98936170212766 93 10 98.9 0 280 2 13 105 WP_256690022.1 cell division protein SepF [Cetobacterium sp. NK01] diamond 279 179 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. NK01

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;