RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA564810" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA564810 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16436251 16436251 PRJNA564810_S_NODE_3193_length_293_cov_1.491228_g3171_i0 PRJNA564810 3193 293 1.491228 4.36929804 Bigyra 2683628 SAR_Eukaryotes SAR_Eukaryotes 74.3 2.62e-14   NR KAF4754552.1 32597 g3171 i0 58.3 2.93856655290102 48 20 49.1 0 2 145 24 71 KAF4754552.1 hypothetical protein FOZ63_005953, partial [Perkinsus olseni] diamond 861 74.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
19680653 19680653 PRJNA564810_S_NODE_4196_length_269_cov_2.392157_g4174_i0 PRJNA564810 4196 269 2.392157 6.43490233 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 65.5 2.67e-10   NR TEB19254.1 2494336 g4174 i0 65.9 0.490706319702602 44 15 49.1 0 268 137 220 263 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 132 65.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016
30300931 30300931 PRJNA564810_S_NODE_532_length_484_cov_54.052506_g510_i0 PRJNA564810 532 484 54.052506 261.61412904 Perkinsus sp. BL_2 28001 SAR_Eukaryotes SAR_Eukaryotes 59.3 4.22e-7   NR TEB19254.1 2494336 g510 i0 42 0.502066115702479 81 42 49.6 3 479 240 187 263 TEB19254.1 hypothetical protein C9890_0250 [Perkinsus sp. BL_2016] diamond 243 59.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus sp. BL_2016

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;