RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA564810" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA564810 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5657998 5657998 PRJNA564810_S_NODE_785_length_433_cov_15.057065_g763_i0 PRJNA564810 785 433 15.057065 65.19709145 Plasmodium coatneyi 208452 SAR_Eukaryotes SAR_Eukaryotes 101 4.02e-24   NR XP_019915441.1 208452 g763 i0 63.2 3.8175519630485 68 25 47.1 0 429 226 96 163 XP_019915441.1 60S ribosomal protein L12 [Plasmodium coatneyi] diamond 1653 101 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium coatneyi
27377785 27377785 PRJNA564810_S_NODE_5823_length_240_cov_1.165714_g5801_i0 PRJNA564810 5823 240 1.165714 2.7977136 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 53.9 4.12e-6   NR XP_029218297.1 94643 g5801 i0 73.5 2.9375 34 9 42.5 0 2 103 1087 1120 XP_029218297.1 proteasome 26S regulatory subunit [Besnoitia besnoiti] diamond 705 54.3 0.992633517495396 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
28563734 28563734 PRJNA564810_S_NODE_3907_length_275_cov_3.719048_g3885_i0 PRJNA564810 3907 275 3.719048 10.227382 Theileria orientalis 68886 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.0018   NR UKK02333.1 68886 g3885 i0 52.8 0.392727272727273 36 17 39.3 0 14 121 173 208 UKK02333.1 60S ribosomal protein L10 [Theileria orientalis] diamond 108 46.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;