RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA564810" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA564810 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18406193 18406193 PRJNA564810_S_NODE_2415_length_318_cov_3.699605_g2393_i0 PRJNA564810 2415 318 3.699605 11.7647439 Amycolatopsis 1813 Bacteria Bacteria 102 4.7399999999999997e-23   NR WP_366579659.1 3156765 g2393 i0 60.7 1.58490566037736 84 33 79.2 0 316 65 309 392 WP_366579659.1 S8 family peptidase [Amycolatopsis sp. NPDC047767] diamond 504 102 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis sp. NPDC047767
29258011 29258011 PRJNA564810_S_NODE_4549_length_261_cov_3.061224_g4527_i0 PRJNA564810 4549 261 3.061224 7.98979464 Streptomyces venezuelae 54571 Bacteria Bacteria 43.9 0.0175   NR WP_224272431.1 54571 g4527 i0 34.1 0.942528735632184 82 50 94.3 1 8 253 278 355 WP_224272431.1 hypothetical protein [Streptomyces venezuelae] diamond 246 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces venezuelae
29321312 29321312 PRJNA564810_S_NODE_6989_length_223_cov_2.151899_g6967_i0 PRJNA564810 6989 223 2.151899 4.79873477 Skermania piniformis 39122 Bacteria Bacteria 72 1.15e-12   NR WP_066474287.1 39122 g6967 i0 84.6 4.7219730941704 39 6 52.5 0 3 119 344 382 WP_066474287.1 acetyl-CoA C-acetyltransferase [Skermania piniformis] diamond 1053 72 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Skermania Skermania pinensis
31041178 31041178 PRJNA564810_S_NODE_1375_length_371_cov_3.003268_g1353_i0 PRJNA564810 1375 371 3.003268 11.14212428 Bacillati 1783272 Bacteria Bacteria 48.5 2.52e-4   NR MEA2136664.1 2586742 g1353 i0 52.3 1.40700808625337 44 21 35.6 0 32 163 44 87 MEA2136664.1 hypothetical protein [Solirubrobacteraceae bacterium] diamond 522 48.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;