RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA564810" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA564810 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26636055 26636055 PRJNA564810_S_NODE_2241_length_326_cov_1.681992_g2219_i0 PRJNA564810 2241 326 1.681992 5.48329392 Acidobacteriota bacterium 1978231 Bacteria Bacteria 108 6.25e-25   NR MDJ0841895.1 1978231 g2219 i0 57.6 0.846625766871166 92 37 84.7 1 49 324 24 113 MDJ0841895.1 5'-nucleotidase C-terminal domain-containing protein [Acidobacteriota bacterium] diamond 276 108 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27584786 27584786 PRJNA564810_S_NODE_8884_length_194_cov_5.224806_g8862_i0 PRJNA564810 8884 194 5.224806 10.13612364 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42.7 0.0188   NR MBM3765365.1 1978231 g8862 i0 37.5 0.989690721649485 64 36 99 1 2 193 149 208 MBM3765365.1 hypothetical protein [Acidobacteriota bacterium] diamond 192 42.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31248339 31248339 PRJNA564810_S_NODE_7255_length_220_cov_3.470968_g7233_i0 PRJNA564810 7255 220 3.470968 7.6361296 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.9 0.0103   NR MBM3765365.1 1978231 g7233 i0 37.5 0.872727272727273 64 36 87.3 1 5 196 149 208 MBM3765365.1 hypothetical protein [Acidobacteriota bacterium] diamond 192 43.9 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31722735 31722735 PRJNA564810_S_NODE_6817_length_225_cov_2.125000_g6795_i0 PRJNA564810 6817 225 2.125 4.78125 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42.4 0.0378   NR MBM3765365.1 1978231 g6795 i0 40 0.666666666666667 50 26 66.7 1 60 209 163 208 MBM3765365.1 hypothetical protein [Acidobacteriota bacterium] diamond 150 42.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;