RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23500807 23500807 PRJNA564013_P_NODE_182639_length_322_cov_7.172414_g179789_i0 PRJNA564013 182639 322 7.172414 23.09517308 Rhodothermaceae bacterium 2026787 Bacteria Bacteria 63.2 5.25e-9   NR MXX98037.1 2026787 g179789 i0 79.4 0.316770186335404 34 7 31.7 0 126 25 28 61 MXX98037.1 serine protease [Rhodothermaceae bacterium] diamond 102 63.2 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
24774662 24774662 PRJNA564013_P_NODE_183820_length_321_cov_6.176923_g180970_i0 PRJNA564013 183820 321 6.176923 19.82792283 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 151 5.95e-40   NR HEX8387107.1 2838334 g180970 i0 74.5 0.91588785046729 98 25 91.6 0 298 5 255 352 HEX8387107.1 transglycosylase domain-containing protein [Rubricoccaceae bacterium] diamond 294 151 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
27364037 27364037 PRJNA564013_P_NODE_306163_length_221_cov_8.206250_g303311_i0 PRJNA564013 306163 221 8.20625 18.1358125 Rhodothermus marinus 29549 Bacteria Bacteria 47 8.96e-4   NR WP_161541183.1 29549 g303311 i0 74.1 0.665158371040724 27 7 36.7 0 89 9 1 27 WP_161541183.1 AAA family ATPase [Rhodothermus marinus] diamond 147 47 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
27756670 27756670 PRJNA564013_P_NODE_17984_length_859_cov_7.106516_g15823_i0 PRJNA564013 17984 859 7.106516 61.04497244 Pseudomonadati 3379134 Bacteria Bacteria 474 2.9299999999999992e-161   NR WP_161541183.1 29549 g15823 i0 82.4 1.94179278230501 278 48 96.7 1 3 833 344 621 WP_161541183.1 AAA family ATPase [Rhodothermus marinus] diamond 1668 476 0.995798319327731 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;