RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA564013 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27914128 27914128 PRJNA564013_P_NODE_237505_length_272_cov_2.649289_g234653_i0 PRJNA564013 237505 272 2.649289 7.20606608 root 1 Root_unresolved Root_unresolved 97.4 2.54e-21   NR KAI6657410.1 111878 g234653 i0 58.3 4.66544117647059 84 35 92.6 0 21 272 318 401 KAI6657410.1 Amidohydrolase 2 [Oopsacas minuta] diamond 1269 97.4 1 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Leucopsacidae Oopsacas Oopsacas minuta
32179637 32179637 PRJNA564013_P_NODE_283058_length_236_cov_6.274286_g280206_i0 PRJNA564013 283058 236 6.274286 14.80731496 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.1 0.0039   NR ABD65434.1 55567 g280206 i0 43.3 3.8771186440678 60 32 76.3 1 216 37 150 207 ABD65434.1 Rab10 [Suberites domuncula] diamond 915 45.1 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Suberitidae Suberites Suberites domuncula

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;