RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA564013 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28103575 28103575 PRJNA564013_P_NODE_75905_length_464_cov_12.858561_g73084_i0 PRJNA564013 75905 464 12.858561 59.66372304 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.5 4.61e-9   NR AAZ06404.1 5755 g73084 i0 43 5.21120689655172 100 39 64 2 141 437 636 718 AAZ06404.1 mitochondrial helicase twinkle [Acanthamoeba castellanii] diamond 2418 65.9 0.993930197268589 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28829823 28829823 PRJNA564013_P_NODE_226948_length_281_cov_5.050000_g224097_i0 PRJNA564013 226948 281 5.05 14.1905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 7.31e-4   NR XP_004336579.1 1257118 g224097 i0 46.2 1.18505338078292 52 22 55.5 1 258 103 524 569 XP_004336579.1 Prokumamolisin, activation domain containing protein [Acanthamoeba castellanii str. Neff] diamond 333 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30837570 30837570 PRJNA564013_P_NODE_58994_length_520_cov_108.980392_g56207_i0 PRJNA564013 58994 520 108.980392 566.6980384 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 124 1.05e-32   NR XP_004367517.1 1257118 g56207 i0 44.3 0.807692307692308 140 74 78.5 2 456 49 3 142 XP_004367517.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 420 124 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30964046 30964046 PRJNA564013_P_NODE_151954_length_349_cov_38.829861_g149105_i0 PRJNA564013 151954 349 38.829861 135.51621489 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 92.8 1.59e-19   NR XP_004341751.1 1257118 g149105 i0 61.3 0.644699140401146 75 27 64.5 1 26 250 89 161 XP_004341751.1 protein tolA, putative [Acanthamoeba castellanii str. Neff] diamond 225 92.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32828968 32828968 PRJNA564013_P_NODE_257120_length_255_cov_10.417526_g254268_i0 PRJNA564013 257120 255 10.417526 26.5646913 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 4.06e-7   NR XP_004341240.1 1257118 g254268 i0 42 0.811764705882353 69 39 81.2 1 47 253 194 261 XP_004341240.1 uncharacterized protein ACA1_031880 [Acanthamoeba castellanii str. Neff] diamond 207 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;