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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA564013 · 34 ✖

analysis 1

  • diamond · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8205855 8205855 PRJNA564013_P_NODE_81807_length_448_cov_9.886305_g78981_i0 PRJNA564013 81807 448 9.886305 44.2906464 Campylobacter jejuni 197 Bacteria Bacteria 140 1.6799999999999999e-40   NR WP_341557574.1 197 g78981 i0 95.8 0.475446428571429 71 3 47.5 0 215 427 1 71 WP_341557574.1 hypothetical protein, partial [Campylobacter jejuni] diamond 213 140 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
14581560 14581560 PRJNA564013_P_NODE_70652_length_480_cov_12.033413_g67840_i0 PRJNA564013 70652 480 12.033413 57.7603824 Nitratiruptor sp. YY 2081525 Bacteria Bacteria 91.7 4.24e-18   NR WP_370583958.1 2724897 g67840 i0 41.1 0.9125 146 79 90 4 28 459 294 434 WP_370583958.1 NHL repeat-containing protein [Nitratiruptor sp. YY08-10] diamond 438 91.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitratiruptor Nitratiruptor sp. YY08-10
23501302 23501302 PRJNA564013_P_NODE_205759_length_301_cov_1.116667_g202908_i0 PRJNA564013 205759 301 1.116667 3.36116767 Sulfuricurvum sp. IAE1 2546102 Bacteria Bacteria 207 1.6000000000000004e-65   NR WP_132812432.1 2546102 g202908 i0 99 0.98671096345515 99 1 98.7 0 4 300 79 177 WP_132812432.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase [Sulfuricurvum sp. IAE1] diamond 297 207 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfuricurvum Sulfuricurvum sp. IAE1
26826289 26826289 PRJNA564013_P_NODE_350181_length_198_cov_4.525547_g347329_i0 PRJNA564013 350181 198 4.525547 8.96058306 Helicobacter pylori 210 Bacteria Bacteria 48.5 1.19e-5   NR GAA9125267.1 210 g347329 i0 84 0.378787878787879 25 4 37.9 0 1 75 4 28 GAA9125267.1 hypothetical protein Kyoto190A_0800 [Helicobacter pylori] diamond 75 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27079289 27079289 PRJNA564013_P_NODE_92522_length_423_cov_492.582873_g89689_i0 PRJNA564013 92522 423 492.582873 2083.62555279 Helicobacter pylori 210 Bacteria Bacteria 94 2.42e-22   NR GAA9180441.1 210 g89689 i0 88.9 0.319148936170213 45 5 31.9 0 183 317 1 45 GAA9180441.1 hypothetical protein Kyoto193A_2360 [Helicobacter pylori] diamond 135 94 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27251041 27251041 PRJNA564013_P_NODE_339683_length_204_cov_2.321678_g336831_i0 PRJNA564013 339683 204 2.321678 4.73622312 Pseudomonadati 3379134 Bacteria Bacteria 39.7 0.0261   NR GAA8912035.1 210 g336831 i0 50 0.720588235294118 32 16 47.1 0 6 101 1 32 GAA8912035.1 hypothetical protein Kyoto166A_2340 [Helicobacter pylori] diamond 147 40 0.9925 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27490142 27490142 PRJNA564013_P_NODE_318083_length_214_cov_6.411765_g315231_i0 PRJNA564013 318083 214 6.411765 13.7211771 Helicobacter pylori 210 Bacteria Bacteria 59.7 5.96e-10   NR GAA6899297.1 210 g315231 i0 73.5 0.476635514018692 34 9 47.7 0 46 147 4 37 GAA6899297.1 hypothetical protein Kyoto207A_0910 [Helicobacter pylori] diamond 102 59.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27711480 27711480 PRJNA564013_P_NODE_135864_length_365_cov_5.351974_g133016_i0 PRJNA564013 135864 365 5.351974 19.5347051 Helicobacter pylori 210 Bacteria Bacteria 82.4 2.71e-18   NR GAA8692375.1 210 g133016 i0 87.8 0.336986301369863 41 5 33.7 0 24 146 5 45 GAA8692375.1 hypothetical protein Kyoto145A_2350 [Helicobacter pylori] diamond 123 82.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27774363 27774363 PRJNA564013_P_NODE_173424_length_330_cov_24.828996_g170574_i0 PRJNA564013 173424 330 24.828996 81.9356868 Helicobacter pylori 210 Bacteria Bacteria 44.3 0.00303   NR GAA9192772.1 210 g170574 i0 82.6 0.209090909090909 23 4 20.9 0 138 70 1 23 GAA9192772.1 hypothetical protein Kyoto193A_3750 [Helicobacter pylori] diamond 69 44.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28184449 28184449 PRJNA564013_P_NODE_357606_length_193_cov_3.833333_g354754_i0 PRJNA564013 357606 193 3.833333 7.39833269 Arcobacter suis 1278212 Bacteria Bacteria 58.5 2.45e-8   NR WP_118885857.1 1278212 g354754 i0 48.2 0.870466321243523 56 29 87 0 25 192 107 162 WP_118885857.1 hypothetical protein [Arcobacter suis] diamond 168 58.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis
28247689 28247689 PRJNA564013_P_NODE_46686_length_574_cov_21.998051_g43940_i0 PRJNA564013 46686 574 21.998051 126.26881274 Helicobacter pylori 210 Bacteria Bacteria 56.6 3.49e-7   NR GAA9043165.1 210 g43940 i0 68.6 0.684668989547038 35 11 18.3 0 48 152 16 50 GAA9043165.1 hypothetical protein Kyoto184A_02530 [Helicobacter pylori] diamond 393 56.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28311071 28311071 PRJNA564013_P_NODE_358106_length_193_cov_2.431818_g355254_i0 PRJNA564013 358106 193 2.431818 4.69340874 Helicobacter pylori 210 Bacteria Bacteria 57.4 4.09e-9   NR GAA8703816.1 210 g355254 i0 71.4 1.13471502590674 35 10 54.4 0 50 154 5 39 GAA8703816.1 hypothetical protein Kyoto145A_3440 [Helicobacter pylori] diamond 219 57.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28437372 28437372 PRJNA564013_P_NODE_106466_length_400_cov_5.224189_g103627_i0 PRJNA564013 106466 400 5.224189 20.896756 Helicobacter pylori 210 Bacteria Bacteria 45.1 0.00368   NR GAA9030935.1 210 g103627 i0 100 0.135 18 0 13.5 0 2 55 2 19 GAA9030935.1 hypothetical protein Kyoto181A_8700 [Helicobacter pylori] diamond 54 45.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28451227 28451227 PRJNA564013_P_NODE_259306_length_254_cov_1.974093_g256454_i0 PRJNA564013 259306 254 1.974093 5.01419622 Pseudomonadati 3379134 Bacteria Bacteria 55.5 7.93e-7   NR EOH1988376.1 197 g256454 i0 71.1 0.874015748031496 38 11 44.9 0 138 25 1 38 EOH1988376.1 hypothetical protein [Campylobacter jejuni] diamond 222 55.8 0.99462365591397806 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
28469044 28469044 PRJNA564013_P_NODE_350366_length_198_cov_3.591241_g347514_i0 PRJNA564013 350366 198 3.591241 7.11065718 Helicobacter pylori 210 Bacteria Bacteria 43.5 0.0011   NR GAA9129654.1 210 g347514 i0 50 0.848484848484849 56 17 77.3 2 27 179 7 56 GAA9129654.1 hypothetical protein Kyoto190A_1920 [Helicobacter pylori] diamond 168 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28640659 28640659 PRJNA564013_P_NODE_170007_length_333_cov_246.547794_g167157_i0 PRJNA564013 170007 333 246.547794 821.00415402 Bacteria 2 Bacteria Bacteria 66.6 1.95e-11   NR MDU9799813.1 210 g167157 i0 80 1.8018018018018 40 8 36 0 120 1 1 40 MDU9799813.1 hypothetical protein [Helicobacter pylori] diamond 600 66.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28798177 28798177 PRJNA564013_P_NODE_66807_length_492_cov_150.213457_g64002_i0 PRJNA564013 66807 492 150.213457 739.05020844 Bacteria 2 Bacteria Bacteria 56.2 8.65e-7   NR MDU9799813.1 210 g64002 i0 100 0.280487804878049 23 0 14 0 1 69 2 24 MDU9799813.1 hypothetical protein [Helicobacter pylori] diamond 138 56.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29068922 29068922 PRJNA564013_P_NODE_294908_length_228_cov_14.610778_g292056_i0 PRJNA564013 294908 228 14.610778 33.31257384 Helicobacter pylori 210 Bacteria Bacteria 40 0.0251   NR GAA6875668.1 210 g292056 i0 93.1 0.381578947368421 29 2 38.2 0 93 7 11 39 GAA6875668.1 hypothetical protein Kyoto206A_4490 [Helicobacter pylori] diamond 87 40 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30047486 30047486 PRJNA564013_P_NODE_368291_length_181_cov_15.391667_g365439_i0 PRJNA564013 368291 181 15.391667 27.85891727 Helicobacter pylori 210 Bacteria Bacteria 39.3 0.0421   NR GAA8930966.1 210 g365439 i0 55.6 0.447513812154696 27 12 44.8 0 137 57 1 27 GAA8930966.1 hypothetical protein Kyoto166A_4300 [Helicobacter pylori] diamond 81 39.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30251253 30251253 PRJNA564013_P_NODE_110712_length_394_cov_7.768769_g107871_i0 PRJNA564013 110712 394 7.768769 30.60894986 Pseudomonadati 3379134 Bacteria Bacteria 50.8 9.94e-6   NR MBQ7134643.1 205 g107871 i0 64.7 0.49492385786802 34 12 25.9 0 270 371 9 42 MBQ7134643.1 BspA family leucine-rich repeat surface protein [Campylobacter sp.] diamond 195 51.2 0.9921875 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp.
30269124 30269124 PRJNA564013_P_NODE_352452_length_197_cov_2.147059_g349600_i0 PRJNA564013 352452 197 2.147059 4.22970623 Helicobacter pylori 210 Bacteria Bacteria 39.7 0.0243   NR GAA8912035.1 210 g349600 i0 68.2 0.33502538071066 22 7 33.5 0 3 68 16 37 GAA8912035.1 hypothetical protein Kyoto166A_2340 [Helicobacter pylori] diamond 66 39.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30440723 30440723 PRJNA564013_P_NODE_37873_length_627_cov_239.150177_g35193_i0 PRJNA564013 37873 627 239.150177 1499.47160979 Bacteria 2 Bacteria Bacteria 44.3 0.0463   NR MDU9799813.1 210 g35193 i0 81.5 0.38755980861244 27 5 12.9 0 81 1 14 40 MDU9799813.1 hypothetical protein [Helicobacter pylori] diamond 243 44.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30647737 30647737 PRJNA564013_P_NODE_70253_length_482_cov_2.384798_g67441_i0 PRJNA564013 70253 482 2.384798 11.49472636 Desulfurellales bacterium 2482794 Bacteria Bacteria 99.8 1.1699999999999997e-23   NR TXH56981.1 2482794 g67441 i0 61.5 0.485477178423237 78 29 47.9 1 386 156 1 78 TXH56981.1 MAG: hypothetical protein E6Q97_05170 [Desulfurellales bacterium] diamond 234 99.8 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
30774509 30774509 PRJNA564013_P_NODE_29674_length_696_cov_6.782677_g27119_i0 PRJNA564013 29674 696 6.782677 47.20743192 Helicobacter pylori 210 Bacteria Bacteria 49.7 1.76e-4   NR GAA8930966.1 210 g27119 i0 69 0.125 29 9 12.5 0 263 349 14 42 GAA8930966.1 hypothetical protein Kyoto166A_4300 [Helicobacter pylori] diamond 87 49.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30995572 30995572 PRJNA564013_P_NODE_268794_length_246_cov_18.562162_g265942_i0 PRJNA564013 268794 246 18.562162 45.66291852 Desulfurellales bacterium 2482794 Bacteria Bacteria 53.9 4.5e-6   NR TXH46962.1 2482794 g265942 i0 40.7 0.719512195121951 59 35 72 0 241 65 677 735 TXH46962.1 MAG: hypothetical protein E6Q97_28150 [Desulfurellales bacterium] diamond 177 53.9 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
31311499 31311499 PRJNA564013_P_NODE_355435_length_195_cov_2.059701_g352583_i0 PRJNA564013 355435 195 2.059701 4.01641695 Helicobacter pylori 210 Bacteria Bacteria 47.8 2.41e-5   NR GAA8930966.1 210 g352583 i0 95 0.615384615384615 20 1 30.8 0 195 136 26 45 GAA8930966.1 hypothetical protein Kyoto166A_4300 [Helicobacter pylori] diamond 120 47.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32070763 32070763 PRJNA564013_P_NODE_341418_length_203_cov_3.704225_g338566_i0 PRJNA564013 341418 203 3.704225 7.51957675 Helicobacter pylori 210 Bacteria Bacteria 42.4 0.00489   NR GAA6820949.1 210 g338566 i0 48.7 0.901477832512315 39 13 47.3 1 201 106 1 39 GAA6820949.1 hypothetical protein Kyoto200A_3790 [Helicobacter pylori] diamond 183 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32179639 32179639 PRJNA564013_P_NODE_327138_length_210_cov_0.872483_g324286_i0 PRJNA564013 327138 210 0.872483 1.8322143 Pseudomonadati 3379134 Bacteria Bacteria 72 1.12e-12   NR MFA6193201.1 2022749 g324286 i0 49.3 5.91428571428571 69 35 98.6 0 209 3 431 499 MFA6193201.1 diguanylate cyclase [Sulfurimonas sp.] diamond 1242 72 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sp.
32197405 32197405 PRJNA564013_P_NODE_250858_length_260_cov_12.623116_g248006_i0 PRJNA564013 250858 260 12.623116 32.8201016 Helicobacter pylori 210 Bacteria Bacteria 42.4 0.0043   NR GAA6875668.1 210 g248006 i0 71.8 0.45 39 6 39.2 1 228 127 1 39 GAA6875668.1 hypothetical protein Kyoto206A_4490 [Helicobacter pylori] diamond 117 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32197407 32197407 PRJNA564013_P_NODE_270898_length_245_cov_3.135870_g268046_i0 PRJNA564013 270898 245 3.13587 7.6828815 Helicobacter pylori 210 Bacteria Bacteria 41.6 0.0241   NR GAA8919759.1 210 g268046 i0 84.2 0.23265306122449 19 3 23.3 0 192 136 1 19 GAA8919759.1 hypothetical protein Kyoto166A_3640 [Helicobacter pylori] diamond 57 41.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32229188 32229188 PRJNA564013_P_NODE_60158_length_516_cov_7.780220_g57367_i0 PRJNA564013 60158 516 7.78022 40.1459352 Helicobacter pylori 210 Bacteria Bacteria 61.2 4.18e-9   NR GAA9038100.1 210 g57367 i0 81.8 0.616279069767442 33 6 19.2 0 281 183 12 44 GAA9038100.1 hypothetical protein Kyoto184A_01000 [Helicobacter pylori] diamond 318 61.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32292632 32292632 PRJNA564013_P_NODE_259679_length_253_cov_13.953125_g256827_i0 PRJNA564013 259679 253 13.953125 35.30140625 Helicobacter pylori 210 Bacteria Bacteria 42 0.0109   NR GAA9184181.1 210 g256827 i0 76 0.296442687747036 25 6 29.6 0 139 65 3 27 GAA9184181.1 hypothetical protein Kyoto193A_2860 [Helicobacter pylori] diamond 75 42 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32559440 32559440 PRJNA564013_P_NODE_337299_length_205_cov_2.611111_g334447_i0 PRJNA564013 337299 205 2.611111 5.35277755 Bacteria 2 Bacteria Bacteria 56.2 1.3e-8   NR GAA6899098.1 210 g334447 i0 77.4 1.40487804878049 31 6 45.4 1 20 112 7 36 GAA6899098.1 hypothetical protein Kyoto207A_0760 [Helicobacter pylori] diamond 288 56.6 0.992932862190813 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32765838 32765838 PRJNA564013_P_NODE_360880_length_191_cov_2.715385_g358028_i0 PRJNA564013 360880 191 2.715385 5.18638535 Helicobacter pylori 210 Bacteria Bacteria 55.1 1.97e-8   NR GAA8838853.1 210 g358028 i0 89.7 0.455497382198953 29 3 45.5 0 189 103 14 42 GAA8838853.1 hypothetical protein Kyoto149A_5200 [Helicobacter pylori] diamond 87 55.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;