RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 10 ✖

bioproject 1

  • PRJNA564013 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20258629 20258629 PRJNA564013_P_NODE_238256_length_271_cov_5.361905_g235404_i0 PRJNA564013 238256 271 5.361905 14.53076255 Fusobacterium periodonticum 860 Bacteria Bacteria 162 1.1999999999999998e-44   NR MBF1205085.1 860 g235404 i0 94.1 2.83394833948339 85 5 94.1 0 267 13 300 384 MBF1205085.1 autotransporter adhesin [Fusobacterium periodonticum] diamond 768 162 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
25358247 25358247 PRJNA564013_P_NODE_202640_length_303_cov_24.314050_g199789_i0 PRJNA564013 202640 303 24.31405 73.6715715 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 158 1.66e-42   NR WP_053393422.1 712357 g199789 i0 84.6 2.7029702970297 91 13 90.1 1 299 27 454 543 WP_053393422.1 alpha-amylase family glycosyl hydrolase [Leptotrichia sp. oral taxon 212] diamond 819 158 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
26889612 26889612 PRJNA564013_P_NODE_117161_length_386_cov_4.221538_g114317_i0 PRJNA564013 117161 386 4.221538 16.29513668 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 187 4.83e-57   NR WP_314326613.1 2663009 g114317 i0 87.9 0.83160621761658 107 13 83.2 0 350 30 88 194 WP_314326613.1 toxin-antitoxin system YwqK family antitoxin [Fusobacterium pseudoperiodonticum] diamond 321 187 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
27616465 27616465 PRJNA564013_P_NODE_322104_length_212_cov_3.337748_g319252_i0 PRJNA564013 322104 212 3.337748 7.07602576 Leptotrichia sp. 104608 Bacteria Bacteria 79 2.79e-15   NR MBF1333916.1 104608 g319252 i0 100 0.523584905660377 37 0 52.4 0 130 20 1 37 MBF1333916.1 AMP-binding protein [Leptotrichia sp.] diamond 111 79 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp.
27648067 27648067 PRJNA564013_P_NODE_318784_length_214_cov_2.594771_g315932_i0 PRJNA564013 318784 214 2.594771 5.55280994 Streptobacillus canis 2678686 Bacteria Bacteria 71.2 2.12e-12   NR WP_156300312.1 2678686 g315932 i0 60 2.49532710280374 60 23 82.7 1 188 12 54 113 WP_156300312.1 exodeoxyribonuclease VII large subunit [Streptobacillus canis] diamond 534 71.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus canis
28753004 28753004 PRJNA564013_P_NODE_337847_length_205_cov_1.680556_g334995_i0 PRJNA564013 337847 205 1.680556 3.4451398 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 44.3 0.0026   NR WP_069187375.1 712357 g334995 i0 92 0.365853658536585 25 2 36.6 0 203 129 98 122 WP_069187375.1 hypothetical protein [Leptotrichia sp. oral taxon 212] diamond 75 44.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
29447437 29447437 PRJNA564013_P_NODE_331330_length_208_cov_1.346939_g328478_i0 PRJNA564013 331330 208 1.346939 2.80163312 Fusobacterium massiliense 1852365 Bacteria Bacteria 126 3.15e-32   NR WP_074016414.1 1852365 g328478 i0 100 0.894230769230769 62 0 89.4 0 2 187 261 322 WP_074016414.1 putative basic amino acid antiporter YfcC [Fusobacterium massiliense] diamond 186 126 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium massiliense
29731535 29731535 PRJNA564013_P_NODE_22170_length_788_cov_3.818432_g19841_i0 PRJNA564013 22170 788 3.818432 30.08924416 Leptotrichia hongkongensis 554406 Bacteria Bacteria 107 4.570000000000001e-22   NR WP_147005776.1 554406 g19841 i0 60.9 0.704314720812183 92 31 33.1 1 284 24 1 92 WP_147005776.1 autotransporter-associated N-terminal domain-containing protein [Leptotrichia hongkongensis] diamond 555 107 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis
30173934 30173934 PRJNA564013_P_NODE_146632_length_354_cov_26.146758_g143783_i0 PRJNA564013 146632 354 26.146758 92.55952332 Leptotrichia wadei 157687 Bacteria Bacteria 45.8 0.0108   NR WP_304079843.1 157687 g143783 i0 42 0.423728813559322 50 28 41.5 1 349 203 220 269 WP_304079843.1 hypothetical protein [Leptotrichia wadei] diamond 150 45.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
31768110 31768110 PRJNA564013_P_NODE_100517_length_409_cov_6.830460_g97683_i0 PRJNA564013 100517 409 6.83046 27.9365814 Leptotrichia 32067 Bacteria Bacteria 181 5.09e-54   NR WP_146998123.1 109328 g97683 i0 75.8 2.81662591687042 128 31 93.9 0 386 3 91 218 WP_146998123.1 hypothetical protein [Leptotrichia trevisanii] diamond 1152 181 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia trevisanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;