RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA564013 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20951226 20951226 PRJNA564013_P_NODE_216717_length_290_cov_7.965066_g213866_i0 PRJNA564013 216717 290 7.965066 23.0986914 Methanobrevibacter oralis 66851 Archaea Archaea 160 2.72e-45   NR WP_042693050.1 66851 g213866 i0 95.5 0.910344827586207 88 4 91 0 4 267 342 429 WP_042693050.1 uracil-xanthine permease family protein [Methanobrevibacter oralis] diamond 264 160 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter oralis
27093038 27093038 PRJNA564013_P_NODE_45422_length_581_cov_8.026923_g42681_i0 PRJNA564013 45422 581 8.026923 46.63642263 Methanopyrus 2319 Archaea Archaea 106 9.849999999999999e-24   NR WP_088335913.1 1937004 g42681 i0 38.6 3.28399311531842 158 94 81.6 1 23 496 165 319 WP_088335913.1 polyprenyl synthetase family protein [Methanopyrus sp. KOL6] diamond 1908 107 0.990654205607477 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus sp. KOL6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;