RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA564013" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 27 ✖

bioproject 1

  • PRJNA564013 · 27 ✖

analysis 1

  • diamond · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3103221 3103221 PRJNA564013_P_NODE_51043_length_554_cov_11.184584_g48287_i0 PRJNA564013 51043 554 11.184584 61.96259536 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 211 5.18e-67   NR PRP86753.1 1890364 g48287 i0 83.7 0.6985559566787 129 20 69.3 1 88 471 1 129 PRP86753.1 hypothetical protein PROFUN_02902 [Planoprotostelium fungivorum] diamond 387 211 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
7509866 7509866 PRJNA564013_P_NODE_201746_length_304_cov_9.185185_g198895_i0 PRJNA564013 201746 304 9.185185 27.9229624 Physarum polycephalum 5791 Evosea other_Eukaryota 154 1.2099999999999996e-43   NR BAF62618.1 5791 g198895 i0 89.7 2.56578947368421 87 9 85.9 0 19 279 226 312 BAF62618.1 adenine nucleotide translocator [Physarum polycephalum] diamond 780 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
18403820 18403820 PRJNA564013_P_NODE_35735_length_643_cov_18.606529_g33072_i0 PRJNA564013 35735 643 18.606529 119.63998147 root 1 Root_unresolved Root_unresolved 207 1.56e-58   NR XP_012749510.1 1410327 g33072 i0 80 39.1399688958009 125 23 57.4 1 400 32 55 179 XP_012749510.1 hypothetical protein SAMD00019534_106210, partial [Acytostelium subglobosum LB1] diamond 25167 207 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
22229963 22229963 PRJNA564013_P_NODE_80378_length_452_cov_5.309463_g77552_i0 PRJNA564013 80378 452 5.309463 23.99877276 Polysphondylium violaceum 133409 Evosea other_Eukaryota 83.2 8.94e-16   NR KAF2070719.1 133409 g77552 i0 57.3 0.497787610619469 75 29 48.5 3 411 193 120 193 KAF2070719.1 hypothetical protein CYY_007961 [Polysphondylium violaceum] diamond 225 83.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27047701 27047701 PRJNA564013_P_NODE_48362_length_566_cov_34.819802_g45610_i0 PRJNA564013 48362 566 34.819802 197.08007932 Cavenderia fasciculata 261658 Evosea other_Eukaryota 62.8 7.27e-8   NR XP_004359384.1 261658 g45610 i0 28.9 0.916961130742049 173 89 91.7 3 549 31 124 262 XP_004359384.1 DOCK family protein [Cavenderia fasciculata] diamond 519 62.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
27061392 27061392 PRJNA564013_P_NODE_299442_length_225_cov_31.335366_g296590_i0 PRJNA564013 299442 225 31.335366 70.5045735 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.4 1.12e-5   NR XP_020436876.1 670386 g296590 i0 43.1 1.28 51 26 64 1 172 29 9 59 XP_020436876.1 CCCH-type zinc finger-containing protein [Heterostelium album PN500] diamond 288 52.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
27332270 27332270 PRJNA564013_P_NODE_162963_length_340_cov_3.057348_g160113_i0 PRJNA564013 162963 340 3.057348 10.3949832 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 50.4 1.61e-4   NR KAH3756961.1 1580589 g160113 i0 28.8 0.917647058823529 104 74 91.8 0 321 10 28 131 KAH3756961.1 hypothetical protein Pelo_11270 [Pelomyxa schiedti] diamond 312 50.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27395513 27395513 PRJNA564013_P_NODE_149443_length_352_cov_4.515464_g146594_i0 PRJNA564013 149443 352 4.515464 15.89443328 Heterostelium album PN5 2086695 Evosea other_Eukaryota 125 2.02e-33   NR XP_020433280.1 670386 g146594 i0 71.3 1.5 87 25 74.1 0 41 301 106 192 XP_020433280.1 Rho GTPase [Heterostelium album PN500] diamond 528 125 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
27932087 27932087 PRJNA564013_P_NODE_214885_length_292_cov_3.861472_g212034_i0 PRJNA564013 214885 292 3.861472 11.27549824 Polysphondylium violaceum 133409 Evosea other_Eukaryota 87.8 1.01e-17   NR KAF2072569.1 133409 g212034 i0 49.5 0.996575342465753 97 19 99.7 1 292 2 596 662 KAF2072569.1 hypothetical protein CYY_006118 [Polysphondylium violaceum] diamond 291 87.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27932128 27932128 PRJNA564013_P_NODE_86665_length_436_cov_15.008000_g83835_i0 PRJNA564013 86665 436 15.008 65.43488 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 84.3 9.66e-17   NR AKT93954.1 5778 g83835 i0 38.3 2.05733944954128 107 66 73.6 0 405 85 6 112 AKT93954.1 H(+)-transporting ATPase subunit 6 [Vermamoeba vermiformis] diamond 897 84.3 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28103575 28103575 PRJNA564013_P_NODE_75905_length_464_cov_12.858561_g73084_i0 PRJNA564013 75905 464 12.858561 59.66372304 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.5 4.61e-9   NR AAZ06404.1 5755 g73084 i0 43 5.21120689655172 100 39 64 2 141 437 636 718 AAZ06404.1 mitochondrial helicase twinkle [Acanthamoeba castellanii] diamond 2418 65.9 0.993930197268589 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28829823 28829823 PRJNA564013_P_NODE_226948_length_281_cov_5.050000_g224097_i0 PRJNA564013 226948 281 5.05 14.1905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 7.31e-4   NR XP_004336579.1 1257118 g224097 i0 46.2 1.18505338078292 52 22 55.5 1 258 103 524 569 XP_004336579.1 Prokumamolisin, activation domain containing protein [Acanthamoeba castellanii str. Neff] diamond 333 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29114214 29114214 PRJNA564013_P_NODE_63128_length_505_cov_13.682432_g60331_i0 PRJNA564013 63128 505 13.682432 69.0962816 Eumycetozoa 142796 Evosea other_Eukaryota 147 1.53e-41   NR XP_628990.1 352472 g60331 i0 65.7 1.87722772277228 108 36 63.6 1 419 99 85 192 XP_628990.1 Rho GTPase [Dictyostelium discoideum AX4] diamond 948 147 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29447441 29447441 PRJNA564013_P_NODE_350010_length_198_cov_5.934307_g347158_i0 PRJNA564013 350010 198 5.9343070000000004 11.74992786 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 57.4 1.44e-7   NR PRP75039.1 1890364 g347158 i0 53.7 0.818181818181818 54 25 81.8 0 13 174 504 557 PRP75039.1 pyridine nucleotide-disulfide oxidoreductase family protein [Planoprotostelium fungivorum] diamond 162 57.4 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29605195 29605195 PRJNA564013_P_NODE_351830_length_197_cov_3.470588_g348978_i0 PRJNA564013 351830 197 3.470588 6.83705836 Heterostelium album PN5 2086695 Evosea other_Eukaryota 73.2 2.74e-13   NR XP_020430174.1 670386 g348978 i0 53.1 0.974619289340102 64 29 97.5 1 4 195 242 304 XP_020430174.1 equilibrative nucleoside transporter family protein [Heterostelium album PN500] diamond 192 73.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
29826411 29826411 PRJNA564013_P_NODE_227091_length_281_cov_3.786364_g224240_i0 PRJNA564013 227091 281 3.786364 10.63968284 Polysphondylium violaceum 133409 Evosea other_Eukaryota 96.3 1.48e-21   NR KAF2070281.1 133409 g224240 i0 54.9 1.76156583629893 82 36 87.5 1 263 18 185 265 KAF2070281.1 hypothetical protein CYY_008400 [Polysphondylium violaceum] diamond 495 96.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30837570 30837570 PRJNA564013_P_NODE_58994_length_520_cov_108.980392_g56207_i0 PRJNA564013 58994 520 108.980392 566.6980384 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 124 1.05e-32   NR XP_004367517.1 1257118 g56207 i0 44.3 0.807692307692308 140 74 78.5 2 456 49 3 142 XP_004367517.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 420 124 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30964046 30964046 PRJNA564013_P_NODE_151954_length_349_cov_38.829861_g149105_i0 PRJNA564013 151954 349 38.829861 135.51621489 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 92.8 1.59e-19   NR XP_004341751.1 1257118 g149105 i0 61.3 0.644699140401146 75 27 64.5 1 26 250 89 161 XP_004341751.1 protein tolA, putative [Acanthamoeba castellanii str. Neff] diamond 225 92.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31248298 31248298 PRJNA564013_P_NODE_3615_length_1663_cov_10.996255_g2721_i0 PRJNA564013 3615 1663 10.996255 182.86772065 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 55.5 8.17e-4   NR XP_004259254.1 370355 g2721 i0 52.4 0.162357185808779 42 20 7.6 0 1274 1399 1103 1144 XP_004259254.1 protein serine/threonine kinase, putative [Entamoeba invadens IP1] diamond 270 55.5 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
31533225 31533225 PRJNA564013_P_NODE_366176_length_184_cov_30.829268_g363324_i0 PRJNA564013 366176 184 30.829268 56.72585312 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 76.3 2.63e-14   NR PRP78973.1 1890364 g363324 i0 71.4 1.59782608695652 49 13 79.9 1 160 14 550 597 PRP78973.1 serine/threonine protein kinase [Planoprotostelium fungivorum] diamond 294 76.3 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31691075 31691075 PRJNA564013_P_NODE_194197_length_311_cov_17.356000_g191346_i0 PRJNA564013 194197 311 17.356 53.97716 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 89 3.84e-19   NR PRP88321.1 1890364 g191346 i0 65.1 0.607717041800643 63 22 60.8 0 255 67 171 233 PRP88321.1 vacuolar H+-ATPase E subunit [Planoprotostelium fungivorum] diamond 189 89 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31817512 31817512 PRJNA564013_P_NODE_11277_length_1043_cov_4.417515_g9524_i0 PRJNA564013 11277 1043 4.417515 46.07468145 Heterostelium album PN5 2086695 Evosea other_Eukaryota 195 1.13e-51   NR XP_020437979.1 670386 g9524 i0 51.8 1.09300095877277 191 90 54.4 2 465 1031 568 758 XP_020437979.1 Ras guanine nucleotide exchange factor [Heterostelium album PN500] diamond 1140 195 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
31926291 31926291 PRJNA564013_P_NODE_26977_length_725_cov_30.750000_g24488_i0 PRJNA564013 26977 725 30.75 222.9375 Eumycetozoa 142796 Evosea other_Eukaryota 115 1.29e-25   NR KAF2076462.1 133409 g24488 i0 36.3 3.80689655172414 182 109 72.4 2 692 168 137 318 KAF2076462.1 hypothetical protein CYY_002265 [Polysphondylium violaceum] diamond 2760 116 0.991379310344828 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32116335 32116335 PRJNA564013_P_NODE_102118_length_406_cov_18.440580_g99283_i0 PRJNA564013 102118 406 18.44058 74.8687548 Eumycetozoa 142796 Evosea other_Eukaryota 72.4 9.46e-12   NR KAF2072880.1 133409 g99283 i0 59.6 1.68472906403941 57 22 41.4 1 370 203 494 550 KAF2072880.1 hypothetical protein CYY_005804 [Polysphondylium violaceum] diamond 684 72.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
32545662 32545662 PRJNA564013_P_NODE_66759_length_493_cov_3.824074_g63954_i0 PRJNA564013 66759 493 3.824074 18.85268482 Cavenderia fasciculata 261658 Evosea other_Eukaryota 95.9 7.75e-20   NR XP_004359247.1 261658 g63954 i0 38.8 1.57606490872211 139 84 84.6 1 421 5 141 278 XP_004359247.1 uncharacterized protein DFA_01279 [Cavenderia fasciculata] diamond 777 95.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
32828968 32828968 PRJNA564013_P_NODE_257120_length_255_cov_10.417526_g254268_i0 PRJNA564013 257120 255 10.417526 26.5646913 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 4.06e-7   NR XP_004341240.1 1257118 g254268 i0 42 0.811764705882353 69 39 81.2 1 47 253 194 261 XP_004341240.1 uncharacterized protein ACA1_031880 [Acanthamoeba castellanii str. Neff] diamond 207 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32860326 32860326 PRJNA564013_P_NODE_269300_length_246_cov_4.140541_g266448_i0 PRJNA564013 269300 246 4.140541 10.18573086 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 60.8 3.28e-9   NR AKT93945.1 5778 g266448 i0 47.7 0.536585365853659 44 23 53.7 0 152 21 72 115 AKT93945.1 ribosomal protein L6 [Vermamoeba vermiformis] diamond 132 60.8 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;