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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA562549" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA562549 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4373154 4373154 PRJNA562549_P_NODE_21044_length_254_cov_1.772021_g20811_i0 PRJNA562549 21044 254 1.772021 4.50093334 Anas 8835 Chordata Chordata 114 4.43e-29   NR XP_012949371.3 8839 g20811 i0 82.8 2.25590551181102 64 11 75.6 0 253 62 194 257 XP_012949371.3 cytochrome c homolog [Anas platyrhynchos] diamond 573 114 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
23498097 23498097 PRJNA562549_P_NODE_23759_length_240_cov_2.474860_g23526_i0 PRJNA562549 23759 240 2.47486 5.939664 Opisthokonta 33154 Chordata Chordata 97.8 5.17e-24   NR XP_067968919.1 7769 g23526 i0 72.5 15.1375 69 17 86.3 1 208 2 12 78 XP_067968919.1 large ribosomal subunit protein eL32-like [Myxine glutinosa] diamond 3633 97.8 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
24082885 24082885 PRJNA562549_P_NODE_5379_length_498_cov_1.137300_g5149_i0 PRJNA562549 5379 498 1.1373 5.663754 Euleptes europaea 460621 Chordata Chordata 192 2.299999999999999e-53   NR XP_056713062.1 460621 g5149 i0 56.3 27.7650602409639 176 62 97 2 485 3 360 535 XP_056713062.1 ATP-binding cassette sub-family B member 5 [Euleptes europaea] diamond 13827 192 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Sphaerodactylidae Euleptes Euleptes europaea
26618176 26618176 PRJNA562549_P_NODE_36601_length_202_cov_0.914894_g36368_i0 PRJNA562549 36601 202 0.914894 1.84808588 Metazoa 33208 Chordata Chordata 63.2 1.31e-9   NR CAD7675994.1 34880 g36368 i0 58.8 22.7227722772277 51 21 75.7 0 202 50 86 136 CAD7675994.1 unnamed protein product [Nyctereutes procyonoides] diamond 4590 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
26889533 26889533 PRJNA562549_P_NODE_23821_length_240_cov_1.675978_g23588_i0 PRJNA562549 23821 240 1.675978 4.0223472 Grus japonensis 30415 Chordata Chordata 80.1 2.4e-15   NR GAB0205226.1 30415 g23588 i0 52.9 9.6625 68 32 85 0 36 239 45 112 GAB0205226.1 mitochondrial enolase superfamily member 1 [Grus japonensis] diamond 2319 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
27029735 27029735 PRJNA562549_P_NODE_32362_length_209_cov_1.905405_g32129_i0 PRJNA562549 32362 209 1.905405 3.98229645 Metazoa 33208 Chordata Chordata 43.5 0.0128   NR XP_035693469.1 7739 g32129 i0 62.5 2.89952153110048 24 9 34.4 0 207 136 146 169 XP_035693469.1 proteoglycan 4-like [Branchiostoma floridae] diamond 606 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27110528 27110528 PRJNA562549_P_NODE_12162_length_328_cov_3.797753_g11929_i0 PRJNA562549 12162 328 3.797753 12.45662984 Melospiza melodia maxima 2498840 Chordata Chordata 76.6 7.74e-14   NR KAF2983844.1 2498840 g11929 i0 66.7 0.439024390243902 48 16 43.9 0 324 181 184 231 KAF2983844.1 hypothetical protein EK904_005202 [Melospiza melodia maxima] diamond 144 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passerellidae Melospiza Melospiza melodia
27490040 27490040 PRJNA562549_P_NODE_32063_length_210_cov_0.872483_g31830_i0 PRJNA562549 32063 210 0.872483 1.8322143 Hymenochirus boettgeri 247094 Chordata Chordata 45.8 0.00193   NR KAG8439211.1 247094 g31830 i0 38.2 0.785714285714286 55 30 75.7 2 206 48 209 261 KAG8439211.1 hypothetical protein GDO86_005437 [Hymenochirus boettgeri] diamond 165 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
27521429 27521429 PRJNA562549_P_NODE_22903_length_244_cov_2.961749_g22670_i0 PRJNA562549 22903 244 2.961749 7.22666756 Motacilla alba alba 1094192 Chordata Chordata 119 4.27e-29   NR XP_037996015.1 1094192 g22670 i0 75 10.844262295082 80 19 98.4 1 242 3 23 101 XP_037996015.1 ankyrin-3 isoform X26 [Motacilla alba alba] diamond 2646 119 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Motacillidae Motacilla Motacilla alba
27963521 27963521 PRJNA562549_P_NODE_14885_length_298_cov_2.105485_g14652_i0 PRJNA562549 14885 298 2.105485 6.2743453 Geotrypetes seraphini 260995 Chordata Chordata 91.7 4.6e-19   NR XP_033815509.1 260995 g14652 i0 42.7 4.7013422818792 117 46 98.7 3 296 3 317 431 XP_033815509.1 dynein regulatory complex subunit 6 isoform X1 [Geotrypetes seraphini] diamond 1401 91.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
28293031 28293031 PRJNA562549_P_NODE_14906_length_298_cov_1.721519_g14673_i0 PRJNA562549 14906 298 1.721519 5.13012662 Aves 8782 Chordata Chordata 55.8 1.76e-6   NR EOB03778.1 8839 g14673 i0 42.4 1.68120805369128 59 30 56.4 2 262 95 49 106 EOB03778.1 Hepatocyte growth factor activator, partial [Anas platyrhynchos] diamond 501 56.2 0.99288256227758 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
28689963 28689963 PRJNA562549_P_NODE_17127_length_279_cov_1.100917_g16894_i0 PRJNA562549 17127 279 1.100917 3.07155843 Jaculus jaculus 51337 Chordata Chordata 63.2 3.82e-9   NR XP_004666032.2 51337 g16894 i0 34.7 1.05376344086022 98 54 94.6 1 274 11 882 979 XP_004666032.2 NACHT domain- and WD repeat-containing protein 1 isoform X2 [Jaculus jaculus] diamond 294 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Dipodidae Jaculus Jaculus jaculus
29195136 29195136 PRJNA562549_P_NODE_409_length_1408_cov_9.009651_g358_i1 PRJNA562549 409 1408 9.009651 126.85588608 Erpetoichthys calabaricus 27687 Chordata Chordata 563 1.3e-190   NR XP_028670689.1 27687 g358 i1 65.5 3.95028409090909 470 158 99.3 3 3 1400 388 857 XP_028670689.1 major vault protein [Erpetoichthys calabaricus] diamond 5562 563 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
29650418 29650418 PRJNA562549_P_NODE_18830_length_267_cov_2.771845_g18597_i0 PRJNA562549 18830 267 2.771845 7.40082615 Metazoa 33208 Chordata Chordata 127 1.75e-35   NR XP_045139501.1 9371 g18597 i0 87.5 364.213483146067 72 9 80.9 0 216 1 14 85 XP_045139501.1 histone H2A-beta, sperm [Echinops telfairi] diamond 97245 127 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
29857951 29857951 PRJNA562549_P_NODE_29031_length_219_cov_1.613924_g28798_i0 PRJNA562549 29031 219 1.613924 3.53449356 Ambystoma mexicanum 8296 Chordata Chordata 51.2 3.31e-6   NR XP_069491913.1 8296 g28798 i0 36.9 0.89041095890411 65 40 87.7 1 192 1 13 77 XP_069491913.1 cystatin-B-like [Ambystoma mexicanum] diamond 195 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
30251238 30251238 PRJNA562549_P_NODE_16552_length_284_cov_1.165919_g16319_i0 PRJNA562549 16552 284 1.165919 3.31120996 Mammalia 40674 Chordata Chordata 172 2.1399999999999994e-48   NR CAM2108425.1 8467 g16319 i0 79.8 78.3697183098592 94 19 99.3 0 283 2 340 433 CAM2108425.1 unnamed protein product [Caretta caretta] diamond 22257 173 0.994219653179191 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
30300789 30300789 PRJNA562549_P_NODE_33692_length_207_cov_0.890411_g33459_i0 PRJNA562549 33692 207 0.890411 1.84315077 Bison bison bison 43346 Chordata Chordata 89 9.23e-19   NR XP_010853438.1 43346 g33459 i0 69.8 0.768115942028985 53 16 76.8 0 160 2 89 141 XP_010853438.1 PREDICTED: actin-related protein 2/3 complex subunit 1B-like [Bison bison bison] diamond 159 89 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bison Bison bison
30503818 30503818 PRJNA562549_P_NODE_26693_length_228_cov_1.281437_g26460_i0 PRJNA562549 26693 228 1.281437 2.92167636 Metazoa 33208 Chordata Chordata 80.1 8.5e-16   NR XP_002130502.1 7719 g26460 i0 56 3.94736842105263 75 28 98.7 2 227 3 128 197 XP_002130502.1 retinol dehydrogenase 14-like [Ciona intestinalis] diamond 900 80.9 0.990111248454882 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
30724870 30724870 PRJNA562549_P_NODE_22574_length_246_cov_1.643243_g22341_i0 PRJNA562549 22574 246 1.643243 4.04237778 Metazoa 33208 Chordata Chordata 47.4 9.29e-4   NR XP_019646788.1 7741 g22341 i0 58.3 2.84146341463415 36 15 43.9 0 225 118 576 611 XP_019646788.1 PREDICTED: uncharacterized protein LOC109487246 [Branchiostoma belcheri] diamond 699 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
30882847 30882847 PRJNA562549_P_NODE_19454_length_263_cov_2.475248_g19221_i0 PRJNA562549 19454 263 2.475248 6.50990224 Metazoa 33208 Chordata Chordata 63.2 3e-9   NR XP_035698652.1 7739 g19221 i0 47.2 2.4638783269962 53 28 60.5 0 263 105 454 506 XP_035698652.1 DBH-like monooxygenase protein 1 homolog [Branchiostoma floridae] diamond 648 63.5 0.995275590551181 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31041150 31041150 PRJNA562549_P_NODE_27855_length_223_cov_2.283951_g27622_i0 PRJNA562549 27855 223 2.283951 5.09321073 Metazoa 33208 Chordata Chordata 104 4.449999999999999e-24   NR KAJ1149455.1 8319 g27622 i0 68.5 158.139013452915 73 23 98.2 0 223 5 742 814 KAJ1149455.1 hypothetical protein NDU88_002263 [Pleurodeles waltl] diamond 35265 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
31103944 31103944 PRJNA562549_P_NODE_8535_length_393_cov_1.951807_g8302_i0 PRJNA562549 8535 393 1.951807 7.67060151 Metazoa 33208 Chordata Chordata 133 3.4299999999999995e-37   NR XP_050828174.1 9135 g8302 i0 75.6 26.5343511450382 86 21 65.6 0 136 393 1 86 XP_050828174.1 40S ribosomal protein S12 isoform X3 [Serinus canaria] diamond 10428 134 0.992537313432836 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Serinus Serinus canaria
31437900 31437900 PRJNA562549_P_NODE_27496_length_225_cov_1.182927_g27263_i0 PRJNA562549 27496 225 1.182927 2.66158575 Taeniopygia guttata 59729 Chordata Chordata 78.2 7.38e-15   NR XP_030136502.3 59729 g27263 i0 79.5 1.56 39 8 52 0 1 117 116 154 XP_030136502.3 dynein assembly factor with WDR repeat domains 1 isoform X2 [Taeniopygia guttata] diamond 351 78.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Taeniopygia Taeniopygia guttata
31546949 31546949 PRJNA562549_P_NODE_20316_length_258_cov_2.152284_g20083_i0 PRJNA562549 20316 258 2.152284 5.55289272 Metazoa 33208 Chordata Chordata 99.4 4.91e-22   NR XP_064363672.1 8790 g20083 i0 67.6 12.3023255813953 68 22 79.1 0 207 4 25 92 XP_064363672.1 WD repeat-containing protein 49-like [Dromaius novaehollandiae] diamond 3174 99.8 0.995991983967936 Eukaryota Opisthokonta Metazoa Chordata Aves Casuariiformes Dromaiidae Dromaius Dromaius novaehollandiae
31578470 31578470 PRJNA562549_P_NODE_28636_length_220_cov_2.213836_g28403_i0 PRJNA562549 28636 220 2.213836 4.8704392 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92 3.05e-20   NR ACC54802.1 8354 g28403 i0 58.6 19.3772727272727 70 28 95.5 1 11 220 176 244 ACC54802.1 ribosomal protein L4, partial [Xenopus borealis] diamond 4263 92.8 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus borealis
31768092 31768092 PRJNA562549_P_NODE_32577_length_209_cov_0.878378_g32344_i0 PRJNA562549 32577 209 0.878378 1.83581002 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 86.7 3.76e-19   NR KAG8138535.1 35670 g32344 i0 62.5 9.37320574162679 64 24 91.9 0 12 203 125 188 KAG8138535.1 hypothetical protein E2320_004480, partial [Naja naja] diamond 1959 87.4 0.991990846681922 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Naja Naja naja
31862863 31862863 PRJNA562549_P_NODE_23697_length_240_cov_8.368715_g23464_i0 PRJNA562549 23697 240 8.368715 20.084916 Metazoa 33208 Chordata Chordata 58.9 4.46e-9   NR KYO39379.1 8496 g23464 i0 73 1.3625 37 10 46.3 0 232 122 64 100 KYO39379.1 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4 [Alligator mississippiensis] diamond 327 59.3 0.993254637436762 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
31926272 31926272 PRJNA562549_P_NODE_27317_length_225_cov_2.823171_g27084_i0 PRJNA562549 27317 225 2.823171 6.35213475 Metazoa 33208 Chordata Chordata 72.4 9.99e-15   NR KAK9405043.1 8729 g27084 i0 63.6 3.30666666666667 44 16 58.7 0 87 218 32 75 KAK9405043.1 kunitz/BPTI-like toxin [Crotalus adamanteus] diamond 744 72.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
31975716 31975716 PRJNA562549_P_NODE_28898_length_219_cov_2.569620_g28665_i0 PRJNA562549 28898 219 2.56962 5.6274678 Erpetoichthys calabaricus 27687 Chordata Chordata 70.9 2.48e-12   NR XP_051791274.1 27687 g28665 i0 73.5 4.10958904109589 49 12 65.8 1 10 153 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 900 70.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32622130 32622130 PRJNA562549_P_NODE_24720_length_236_cov_1.222857_g24487_i0 PRJNA562549 24720 236 1.222857 2.88594252 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.1 3.6e-4   NR XP_059965158.1 48708 g24487 i0 43.7 2.79661016949153 71 37 87.7 3 26 232 6 75 XP_059965158.1 ras-related protein Rab-7a isoform X1 [Mesoplodon densirostris] diamond 660 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Ziphiidae Mesoplodon Mesoplodon densirostris
32671193 32671193 PRJNA562549_P_NODE_21360_length_252_cov_2.329843_g21127_i0 PRJNA562549 21360 252 2.329843 5.87120436 Chiloscyllium punctatum 137246 Chordata Chordata 43.1 0.0305   NR GCC23241.1 137246 g21127 i0 51.5 0.392857142857143 33 16 39.3 0 250 152 749 781 GCC23241.1 hypothetical protein [Chiloscyllium punctatum] diamond 99 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium punctatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;