RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA562549" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_kingdom 1

  • Bamfordvirae · 3 ✖

bioproject 1

  • PRJNA562549 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27237113 27237113 PRJNA562549_P_NODE_17843_length_274_cov_1.309859_g17610_i0 PRJNA562549 17843 274 1.309859 3.58901366 Pimephales minnow adintovirus 2609864 Viruses Viruses 49.7 1.68e-4   NR DAC81404.1 2609864 g17610 i0 34.7 1.64233576642336 75 48 81 1 270 49 123 197 DAC81404.1 TPA_asm: hypothetical protein [Pimephales minnow adintovirus] diamond 450 49.7 1 Viruses   Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus
28815770 28815770 PRJNA562549_P_NODE_33328_length_208_cov_0.884354_g33095_i0 PRJNA562549 33328 208 0.884354 1.83945632 Adintovirus bos4377 3115894 Viruses Viruses 96.3 1.07e-21   NR DBA50491.1 3115894 g33095 i0 77.9 0.980769230769231 68 15 98.1 0 3 206 116 183 DBA50491.1 MAG TPA_asm: Integrase [Adintovirus bos4377] diamond 204 96.3 1 Viruses   Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus bos4377
32545493 32545493 PRJNA562549_P_NODE_10159_length_361_cov_1.236667_g9926_i0 PRJNA562549 10159 361 1.236667 4.46436787 Homavirus sp. 2487769 Viruses Viruses 109 4.31e-26   NR AYV82419.1 2487769 g9926 i0 46.2 0.864265927977839 104 56 86.4 0 361 50 223 326 AYV82419.1 MAG: elongation factor 1-alpha-like protein [Homavirus sp.] diamond 312 109 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae   Homavirus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;