RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA562549" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 15 ✖

bioproject 1

  • PRJNA562549 · 15 ✖

analysis 1

  • diamond · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3096766 3096766 PRJNA562549_P_NODE_36523_length_202_cov_0.921986_g36290_i0 PRJNA562549 36523 202 0.921986 1.86241172 Eukaryota 2759 Plants Plants 120 9.55e-30   NR RMZ54688.1 3075 g36290 i0 74.6 5.97029702970297 67 17 99.5 0 2 202 447 513 RMZ54688.1 hypothetical protein APUTEX25_003066 [Auxenochlorella protothecoides] diamond 1206 120 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
6923677 6923677 PRJNA562549_P_NODE_13126_length_317_cov_1.015625_g12893_i0 PRJNA562549 13126 317 1.015625 3.21953125 Eukaryota 2759 Plants Plants 172 2.4799999999999994e-48   NR KAK2079209.1 3111 g12893 i0 87.2 16.8264984227129 94 12 89 0 1 282 240 333 KAK2079209.1 Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Prototheca wickerhamii] diamond 5334 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
27995254 27995254 PRJNA562549_P_NODE_9985_length_364_cov_1.795380_g9752_i0 PRJNA562549 9985 364 1.79538 6.5351832 Haematococcus lacustris 44745 Plants Plants 99.4 4.24e-22   NR KAJ9532284.1 44745 g9752 i0 54.1 5.95879120879121 98 45 80.8 0 362 69 239 336 KAJ9532284.1 hypothetical protein QJQ45_010414 [Haematococcus lacustris] diamond 2169 99.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
28942599 28942599 PRJNA562549_P_NODE_27048_length_226_cov_2.636364_g26815_i0 PRJNA562549 27048 226 2.636364 5.95818264 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 68.9 6.45e-12   NR KAL4522098.1 1650286 g26815 i0 45.3 0.995575221238938 75 39 98.2 2 226 5 4 77 KAL4522098.1 hypothetical protein Ndes2437B_g07849 [Chlorella desiccata (nom. nud.)] diamond 225 68.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
30029946 30029946 PRJNA562549_P_NODE_23971_length_239_cov_2.247191_g23738_i0 PRJNA562549 23971 239 2.247191 5.37078649 Eukaryota 2759 Plants Plants 99 3.94e-24   NR KAK2077587.1 3111 g23738 i0 56 3.76569037656904 75 33 94.1 0 7 231 6 80 KAK2077587.1 60S ribosomal protein L21A [Prototheca wickerhamii] diamond 900 99.4 0.995975855130785 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
30363901 30363901 PRJNA562549_P_NODE_13632_length_311_cov_3.224000_g13399_i0 PRJNA562549 13632 311 3.224 10.02664 Volvox africanus 51714 Plants Plants 99 7.059999999999999e-23   NR GLI69515.1 51714 g13399 i0 51.8 1.60128617363344 83 40 80.1 0 56 304 47 129 GLI69515.1 hypothetical protein VaNZ11_014151 [Volvox africanus] diamond 498 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
30616165 30616165 PRJNA562549_P_NODE_27373_length_225_cov_1.987805_g27140_i0 PRJNA562549 27373 225 1.987805 4.47256125 Polytomella sp. Pringsheim 198.8 37502 Plants Plants 124 5.72e-35   NR CBV76072.1 37502 g27140 i0 76 13 75 18 100 0 225 1 7 81 CBV76072.1 60S ribosomal protein L37 [Polytomella sp. Pringsheim 198.80] diamond 2925 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
30900738 30900738 PRJNA562549_P_NODE_19474_length_263_cov_1.990099_g19241_i0 PRJNA562549 19474 263 1.990099 5.23396037 Micractinium tetrahymenae 2728915 Plants Plants 99 3.46e-24   NR KAL4428010.1 2728915 g19241 i0 58.1 0.980988593155893 86 36 98.1 0 258 1 32 117 KAL4428010.1 hypothetical protein ABPG75_002099 [Micractinium tetrahymenae] diamond 258 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium tetrahymenae
31452044 31452044 PRJNA562549_P_NODE_13656_length_311_cov_2.080000_g13423_i0 PRJNA562549 13656 311 2.08 6.4688 Chlorophyta 3041 Plants Plants 99 1.99e-23   NR WIA10393.1 3088 g13423 i0 58.9 3.66559485530547 95 38 91.6 1 286 2 1 94 WIA10393.1 hypothetical protein OEZ85_010585 [Tetradesmus obliquus] diamond 1140 100 0.99 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
31659225 31659225 PRJNA562549_P_NODE_29477_length_217_cov_2.076923_g29244_i0 PRJNA562549 29477 217 2.076923 4.50692291 Auxenochlorella protothecoides 3075 Plants Plants 68.9 1.43e-11   NR XP_011401591.1 3075 g29244 i0 43.7 1.963133640553 71 39 98.2 1 216 4 256 325 XP_011401591.1 Peroxiredoxin-2 [Auxenochlorella protothecoides] diamond 426 68.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
32211178 32211178 PRJNA562549_P_NODE_26178_length_230_cov_0.988166_g25945_i0 PRJNA562549 26178 230 0.988166 2.2727818 Chlamydomonadales 3042 Plants Plants 112 1.39e-28   NR KAF5829881.1 3046 g25945 i0 74.3 27.1695652173913 74 19 96.5 0 8 229 1 74 KAF5829881.1 40S ribosomal protein S3 [Dunaliella salina] diamond 6249 113 0.991150442477876 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
32306346 32306346 PRJNA562549_P_NODE_19499_length_263_cov_1.737624_g19266_i0 PRJNA562549 19499 263 1.737624 4.56995112 root 1 Root_unresolved Root_unresolved 90.5 7.02e-19   NR KAG2489876.1 47281 g19266 i0 54 2.97718631178707 87 39 99.2 1 3 263 244 329 KAG2489876.1 hypothetical protein HYH03_011678 [Edaphochlamys debaryana] diamond 783 91.3 0.991237677984666 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
32369533 32369533 PRJNA562549_P_NODE_32079_length_210_cov_0.872483_g31846_i0 PRJNA562549 32079 210 0.872483 1.8322143 root 1 Root_unresolved Root_unresolved 69.3 1.02e-11   NR WPT11189.1 1470871 g31846 i0 50.7 5.58571428571429 69 32 98.6 1 3 209 130 196 WPT11189.1 hypothetical protein PSENEW3n2_00000629 [Picochlorum sp. SENEW3] diamond 1173 69.7 0.994261119081779 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. SENEW3
32608374 32608374 PRJNA562549_P_NODE_32420_length_209_cov_1.648649_g32187_i0 PRJNA562549 32420 209 1.648649 3.44567641 Chlamydomonas eustigma 1157962 Plants Plants 45.1 0.00365   NR GAX78013.1 1157962 g32187 i0 37.1 0.889952153110048 62 30 83.3 2 176 3 307 363 GAX78013.1 hypothetical protein CEUSTIGMA_g5455.t1 [Chlamydomonas eustigma] diamond 186 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
32891573 32891573 PRJNA562549_P_NODE_15040_length_297_cov_1.101695_g14807_i0 PRJNA562549 15040 297 1.101695 3.27203415 Coccomyxa sp. Obi 2315456 Plants Plants 48.5 6.71e-4   NR BDA51182.1 2315456 g14807 i0 36.2 1.8989898989899 94 56 90.9 3 287 18 591 684 BDA51182.1 Xanthine dehydrogenase [Coccomyxa sp. Obi] diamond 564 48.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;