RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA562549" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA562549 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28373949 28373949 PRJNA562549_P_NODE_32066_length_210_cov_0.872483_g31833_i0 PRJNA562549 32066 210 0.872483 1.8322143 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 71.6 1.56e-12   NR KAJ5077328.1 1746090 g31833 i0 55.8 0.742857142857143 52 23 74.3 0 157 2 570 621 KAJ5077328.1 hypothetical protein M0811_05850 [Anaeramoeba ignava] diamond 156 71.6 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
30047400 30047400 PRJNA562549_P_NODE_36551_length_202_cov_0.921986_g36318_i0 PRJNA562549 36551 202 0.921986 1.86241172 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 87.8 2.03e-19   NR KAJ6253656.1 1746091 g36318 i0 66.1 1.75247524752475 59 20 87.6 0 25 201 3 61 KAJ6253656.1 hypothetical protein M0813_13070 [Anaeramoeba flamelloides] diamond 354 87.8 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
31279791 31279791 PRJNA562549_P_NODE_35915_length_203_cov_0.915493_g35682_i0 PRJNA562549 35915 203 0.915493 1.85845079 Giardia intestinalis 5741 Fornicata other_Eukaryota 43.1 0.0163   NR ESU40144.1 5741 g35682 i0 36.5 0.931034482758621 63 35 90.1 2 198 16 314 373 ESU40144.1 Variant-specific surface protein, partial [Giardia intestinalis] diamond 189 43.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32734471 32734471 PRJNA562549_P_NODE_32560_length_209_cov_0.878378_g32327_i0 PRJNA562549 32560 209 0.878378 1.83581002 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 63.9 7.93e-10   NR XP_068365703.1 1144522 g32327 i0 50.8 2.56937799043062 59 29 84.7 0 182 6 2 60 XP_068365703.1 TPR Domain containing protein [Tritrichomonas foetus] diamond 537 63.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32796990 32796990 PRJNA562549_P_NODE_11400_length_340_cov_1.663082_g11167_i0 PRJNA562549 11400 340 1.663082 5.6544788 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 53.1 2.47e-5   NR KAJ3452967.1 1746091 g11167 i0 34.1 1.90588235294118 82 52 72.4 1 323 78 6 85 KAJ3452967.1 cysteine protease [Anaeramoeba flamelloides] diamond 648 53.1 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;