RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA561212" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561212 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9473896 9473896 PRJNA561212_P_NODE_168_length_2055_cov_4.857719_g132_i0 PRJNA561212 168 2055 4.857719 99.82612545 root 1 Root_unresolved Root_unresolved 786 9.259999999999999e-279   NR WP_013182645.1 71667 g132 i0 62.3 55.0919708029197 599 219 87.2 5 1840 50 10 603 WP_013182645.1 phosphoenolpyruvate carboxykinase (GTP) [Waddlia chondrophila] diamond 113214 788 0.99746192893401 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
28942552 28942552 PRJNA561212_P_NODE_7308_length_406_cov_2.108108_g7097_i0 PRJNA561212 7308 406 2.108108 8.55891848 Candidatus Acheromyda pituitae 3076874 Bacteria Bacteria 88.6 6.33e-18   NR MBX3718576.1 3076874 g7097 i0 54.7 0.554187192118227 75 33 55.4 1 177 401 1 74 MBX3718576.1 NAD(P)H-quinone oxidoreductase [Candidatus Acheromyda pituitae] diamond 225 88.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Acheromyda Candidatus Acheromyda pituitae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;