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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA561212" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA561212 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1821015 1821015 PRJNA561212_P_NODE_17442_length_272_cov_1.241206_g17231_i0 PRJNA561212 17442 272 1.241206 3.37608032 Sarcocystis calchasi 1344799 SAR_Eukaryotes SAR_Eukaryotes 64.7 8.86e-11   NR CAL7865699.1 1344799 g17231 i0 55.1 0.540441176470588 49 22 54 0 156 10 12 60 CAL7865699.1 unnamed protein product [Sarcocystis calchasi] diamond 147 64.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi
6234254 6234254 PRJNA561212_P_NODE_1045_length_1040_cov_1.771458_g902_i0 PRJNA561212 1045 1040 1.771458 18.4231632 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 358 8.229999999999998e-118   NR XP_011132759.1 110365 g902 i0 64.9 8.64807692307692 268 93 77 1 821 21 195 462 XP_011132759.1 putative transport Sec61 alpha subunit [Gregarina niphandrodes] diamond 8994 358 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
22807831 22807831 PRJNA561212_P_NODE_15098_length_289_cov_1.680556_g14887_i0 PRJNA561212 15098 289 1.680556 4.85680684 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 123 3.6699999999999995e-30   NR SBS81330.1 864141 g14887 i0 70 4.67128027681661 90 25 93.4 1 280 11 792 879 SBS81330.1 DNA-directed RNA polymerase II subunit RPB2, putative (RPB2) [Plasmodium ovale curtisi] diamond 1350 124 0.991935483870968 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
27155850 27155850 PRJNA561212_P_NODE_18862_length_262_cov_1.190476_g18651_i0 PRJNA561212 18862 262 1.190476 3.11904712 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 48.5 4.42e-4   NR XP_029222058.1 94643 g18651 i0 35.9 4.46564885496183 78 48 89.3 1 249 16 301 376 XP_029222058.1 hypothetical protein BESB_003900 [Besnoitia besnoiti] diamond 1170 48.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
28658243 28658243 PRJNA561212_P_NODE_16447_length_279_cov_1.436893_g16236_i0 PRJNA561212 16447 279 1.436893 4.00893147 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 53.1 1.33e-5   NR XP_028875135.1 857276 g16236 i0 38.9 1.02150537634409 95 49 98.9 4 4 279 838 926 XP_028875135.1 uncharacterized protein cubi_02717 [Cryptosporidium ubiquitum] diamond 285 53.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum
28847403 28847403 PRJNA561212_P_NODE_19828_length_255_cov_1.241758_g19617_i0 PRJNA561212 19828 255 1.241758 3.1664829 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 51.6 3.06e-5   NR XP_026190023.1 88456 g19617 i0 45.7 2.54117647058824 70 36 80 1 247 44 252 321 XP_026190023.1 transcription elongation factor S-II [Cyclospora cayetanensis] diamond 648 51.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
29068772 29068772 PRJNA561212_P_NODE_7428_length_403_cov_1.312121_g7217_i0 PRJNA561212 7428 403 1.312121 5.28784763 Babesia ovis 5869 SAR_Eukaryotes SAR_Eukaryotes 89.7 8.03e-18   NR GFE52985.1 5869 g7217 i0 52.1 1.39950372208437 73 34 54.3 1 132 350 219 290 GFE52985.1 CW-type Zinc Finger protein [Babesia ovis] diamond 564 89.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia ovis
29131918 29131918 PRJNA561212_P_NODE_8129_length_385_cov_0.948718_g7918_i0 PRJNA561212 8129 385 0.948718 3.6525643 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 63.9 3.73e-9   NR XP_022587039.1 88456 g7918 i0 40.8 1.62857142857143 120 54 84.2 5 51 374 32 146 XP_022587039.1 phosducin-like protein 3 [Cyclospora cayetanensis] diamond 627 63.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
29731381 29731381 PRJNA561212_P_NODE_24630_length_244_cov_1.321637_g24419_i0 PRJNA561212 24630 244 1.321637 3.22479428 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.23e-8   NR XP_011129458.1 110365 g24419 i0 44 0.922131147540984 75 35 92.2 1 11 235 13 80 XP_011129458.1 dephospho-CoA kinase [Gregarina niphandrodes] diamond 225 60.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
30440702 30440702 PRJNA561212_P_NODE_2753_length_663_cov_1.596610_g2548_i0 PRJNA561212 2753 663 1.59661 10.5855243 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 143 2.96e-35   NR SBS83265.1 864141 g2548 i0 38.5 9.66968325791855 218 100 98.6 5 1 654 2431 2614 SBS83265.1 CCR4-NOT transcription complex subunit 1, putative (NOT1) [Plasmodium ovale curtisi] diamond 6411 144 0.993055555555556 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium ovale
32653364 32653364 PRJNA561212_P_NODE_14780_length_292_cov_1.100457_g14569_i0 PRJNA561212 14780 292 1.100457 3.21333444 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 101 1.8899999999999998e-24   NR XP_067073601.1 5824 g14569 i0 56.7 18.4006849315068 90 36 92.5 1 278 9 1 87 XP_067073601.1 translation initiation factor eIF-1A [Plasmodium brasilianum] diamond 5373 102 0.990196078431373 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;