RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA561138" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561138 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29037239 29037239 PRJNA561138_P_NODE_10268_length_400_cov_1.045872_g10073_i0 PRJNA561138 10268 400 1.045872 4.183488 Galemys pyrenaicus 202257 Chordata Chordata 48.9 0.00141   NR KAG8513719.1 202257 g10073 i0 35.7 0.945 126 58 83.3 5 394 62 361 478 KAG8513719.1 ICOS ligand, partial [Galemys pyrenaicus] diamond 378 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Talpidae Galemys Galemys pyrenaicus
32513872 32513872 PRJNA561138_P_NODE_28339_length_244_cov_0.900585_g28144_i0 PRJNA561138 28339 244 0.900585 2.1974274 Bos javanicus 9906 Chordata Chordata 55.8 5.35e-7   NR XP_061292259.1 9906 g28144 i0 61.5 0.479508196721311 39 15 48 0 64 180 42 80 XP_061292259.1 uncharacterized protein LOC133259147 [Bos javanicus] diamond 117 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;