RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA561138" and tax_phylum = "Balneolota"

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tax_superkingdom 1

tax_phylum 1

  • Balneolota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA561138 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26857945 26857945 PRJNA561138_P_NODE_14601_length_343_cov_1.140741_g14406_i0 PRJNA561138 14601 343 1.140741 3.91274163 Balneola sp. 2024824 Bacteria Bacteria 170 2.22e-52   NR MBO6573407.1 2024824 g14406 i0 100 0.699708454810496 80 0 70 0 3 242 40 119 MBO6573407.1 hypothetical protein [Balneola sp.] diamond 240 170 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Balneola Balneola sp.
31515392 31515392 PRJNA561138_P_NODE_20796_length_283_cov_1.100000_g20601_i0 PRJNA561138 20796 283 1.1 3.113 Pseudomonadati 3379134 Bacteria Bacteria 65.1 6.42e-10   NR MCC5906402.1 2053516 g20601 i0 63 0.985865724381625 46 17 48.8 0 280 143 275 320 MCC5906402.1 ATP-dependent Clp protease proteolytic subunit [Balneolaceae bacterium] diamond 279 65.1 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae   Balneolaceae bacterium
32179611 32179611 PRJNA561138_P_NODE_14438_length_345_cov_0.849265_g14243_i0 PRJNA561138 14438 345 0.849265 2.92996425 Gracilimonas 649462 Bacteria Bacteria 65.5 7.64e-10   NR MDR9414712.1 1974203 g14243 i0 41.1 1.90434782608696 73 42 62.6 1 345 130 208 280 MDR9414712.1 helix-turn-helix transcriptional regulator [Gracilimonas sp.] diamond 657 65.5 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Gracilimonas Gracilimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;