RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA561138" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 2 ✖

bioproject 1

  • PRJNA561138 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32070576 32070576 PRJNA561138_P_NODE_17478_length_313_cov_0.962500_g17283_i0 PRJNA561138 17478 313 0.9625 3.012625 Corchorus olitorius 93759 Plants Plants 202 7.55e-60   NR OMP13883.1 93759 g17283 i0 100 0.996805111821086 104 0 99.7 0 313 2 226 329 OMP13883.1 hypothetical protein COLO4_00739, partial [Corchorus olitorius] diamond 312 202 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Corchorus Corchorus olitorius
32133998 32133998 PRJNA561138_P_NODE_16738_length_320_cov_1.558704_g16543_i0 PRJNA561138 16738 320 1.558704 4.9878528 Corchorus olitorius 93759 Plants Plants 89 5.55e-19   NR OMP13480.1 93759 g16543 i0 93.6 0.440625 47 3 44.1 0 180 320 1 47 OMP13480.1 serine carboxypeptidase-like 19-like protein [Corchorus olitorius] diamond 141 89 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Corchorus Corchorus olitorius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;