RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA560932" and tax_phylum = "Vulcanimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA560932 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27332047 27332047 PRJNA560932_P_NODE_22863_length_371_cov_1.020134_g22507_i0 PRJNA560932 22863 371 1.020134 3.78469714 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 56.6 2.14e-6   NR HEY3999186.1 3036772 g22507 i0 36.8 0.768194070080862 95 59 76.8 1 30 314 551 644 HEY3999186.1 hypothetical protein [Candidatus Xenobia bacterium] diamond 285 56.6 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium
31184635 31184635 PRJNA560932_P_NODE_66215_length_241_cov_1.375000_g65859_i0 PRJNA560932 66215 241 1.375 3.31375 Candidatus Xenobia bacterium 3036772 Bacteria Bacteria 41.6 0.0459   NR GMU57807.1 3036772 g65859 i0 39.1 0.796680497925311 64 36 75.9 1 197 15 79 142 GMU57807.1 MAG: hypothetical protein AMXMBFR33_69530 [Candidatus Xenobia bacterium] diamond 192 41.6 1 Bacteria   Bacillati Vulcanimicrobiota Candidatus Xenobia       Candidatus Xenobia bacterium
32891500 32891500 PRJNA560932_P_NODE_59240_length_246_cov_0.890173_g58884_i0 PRJNA560932 59240 246 0.890173 2.18982558 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 134 1.13e-34   NR MFA5507019.1 3107663 g58884 i0 71.6 2.91463414634146 81 22 98.8 1 244 2 270 349 MFA5507019.1 phosphoenolpyruvate carboxykinase (ATP) [Vulcanimicrobiota bacterium] diamond 717 134 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;