RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA560932" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA560932 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26952311 26952311 PRJNA560932_P_NODE_42982_length_279_cov_0.912621_g42626_i0 PRJNA560932 42982 279 0.912621 2.54621259 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 149 1.14e-41   NR ABD46603.1 5778 g42626 i0 68.5 0.989247311827957 92 29 98.9 0 278 3 96 187 ABD46603.1 glycogen debranching enzyme, partial [Vermamoeba vermiformis] diamond 276 149 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30710901 30710901 PRJNA560932_P_NODE_3574_length_894_cov_8.909866_g3294_i0 PRJNA560932 3574 894 8.909866 79.65420204 Amoeba proteus 5775 Tubulinea other_Eukaryota 48.5 0.0169   NR AKN09692.1 5775 g3294 i0 23.7 0.76510067114094 228 166 74.8 4 14 682 3 227 AKN09692.1 Tom40 [Amoeba proteus] diamond 684 48.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31090069 31090069 PRJNA560932_P_NODE_3555_length_896_cov_13.113001_g3275_i0 PRJNA560932 3555 896 13.113001 117.49248896 Amoeba proteus 5775 Tubulinea other_Eukaryota 152 2.9199999999999993e-40   NR AKN09692.1 5775 g3275 i0 32.7 0.950892857142857 284 183 93.4 6 18 854 3 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 852 152 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31659136 31659136 PRJNA560932_P_NODE_67457_length_241_cov_0.886905_g67101_i0 PRJNA560932 67457 241 0.886905 2.13744105 Amoeba proteus 5775 Tubulinea other_Eukaryota 90.1 5.25e-19   NR AAD37351.1 5775 g67101 i0 56.9 1.81742738589212 72 31 89.6 0 240 25 123 194 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 438 90.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;