RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA560029" and tax_superkingdom = "Archaea"

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tax_phylum 2

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

bioproject 1

  • PRJNA560029 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26730392 26730392 PRJNA560029_S_NODE_5021_length_435_cov_3.541436_g4797_i0 PRJNA560029 5021 435 3.541436 15.4052466 archaeon 1906665 Archaea Archaea 55.8 2.78e-6   NR MDP2435560.1 1906665 g4797 i0 50 0.703448275862069 52 24 35.9 1 253 408 117 166 MDP2435560.1 hypothetical protein [archaeon] diamond 306 55.8 1 Archaea               archaeon
29668033 29668033 PRJNA560029_S_NODE_27290_length_269_cov_6.602041_g27066_i0 PRJNA560029 27290 269 6.602041 17.75949029 Promethearchaeota archaeon 2053489 Archaea Archaea 45.8 0.00106   NR MBN2151511.1 2053489 g27066 i0 39 0.657992565055762 59 36 65.8 0 268 92 58 116 MBN2151511.1 hypothetical protein [Promethearchaeota archaeon] diamond 177 45.8 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
30995283 30995283 PRJNA560029_S_NODE_18034_length_313_cov_1.358333_g17810_i0 PRJNA560029 18034 313 1.358333 4.25158229 Nanobdellota archaeon 2026764 Archaea Archaea 88.6 6.87e-18   NR MEK6858974.1 2026764 g17810 i0 44.3 1.01597444089457 106 56 98.7 1 312 4 235 340 MEK6858974.1 hypothetical protein [Nanoarchaeota archaeon] diamond 318 88.6 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;