contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA560029" and tax_phylum = "Spirochaetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3095163 | 3095163 | PRJNA560029_S_NODE_36163_length_236_cov_2.361963_g35939_i0 | PRJNA560029 | 36163 | 236 | 2.361963 | 5.57423268 | root | 1 | Root_unresolved | Root_unresolved | 99.8 | 2.1899999999999998e-25 | NR | MBP5251327.1 | 166 | g35939 | i0 | 81.8 | 2.83474576271186 | 55 | 9 | 69.9 | 1 | 2 | 166 | 29 | 82 | MBP5251327.1 class II fructose-bisphosphate aldolase [Treponema sp.] | diamond | 669 | 99.8 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 27300250 | 27300250 | PRJNA560029_S_NODE_9563_length_371_cov_3.070470_g9339_i0 | PRJNA560029 | 9563 | 371 | 3.07047 | 11.3914437 | Spirochaetia bacterium | 2053615 | Bacteria | Bacteria | 154 | 5.079999999999999e-43 | NR | HTH14612.1 | 2053615 | g9339 | i0 | 73.8 | 3.33153638814016 | 103 | 27 | 83.3 | 0 | 2 | 310 | 81 | 183 | HTH14612.1 beta-ketoacyl-ACP synthase III [Spirochaetia bacterium] | diamond | 1236 | 154 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetia bacterium | |||||
| 27900059 | 27900059 | PRJNA560029_S_NODE_6805_length_403_cov_2.021212_g6581_i0 | PRJNA560029 | 6805 | 403 | 2.021212 | 8.14548436 | Spirochaetaceae bacterium | 1898206 | Bacteria | Bacteria | 54.7 | 1.37e-5 | NR | MFP4179618.1 | 1898206 | g6581 | i0 | 49.2 | 0.439205955334988 | 59 | 28 | 43.9 | 1 | 381 | 205 | 480 | 536 | MFP4179618.1 tryptophanase [Spirochaetaceae bacterium] | diamond | 177 | 54.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaetaceae bacterium | |||
| 27995037 | 27995037 | PRJNA560029_S_NODE_2105_length_583_cov_3.413725_g1887_i0 | PRJNA560029 | 2105 | 583 | 3.413725 | 19.90201675 | Brachyspira alvinipulli | 84379 | Bacteria | Bacteria | 177 | 1.7e-52 | NR | WP_051436841.1 | 84379 | g1887 | i0 | 50.3 | 0.93138936535163 | 181 | 85 | 93.1 | 1 | 579 | 37 | 24 | 199 | WP_051436841.1 PH domain-containing protein [Brachyspira alvinipulli] | diamond | 543 | 177 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira alvinipulli | ||
| 28040615 | 28040615 | PRJNA560029_S_NODE_37665_length_211_cov_4.413043_g37441_i0 | PRJNA560029 | 37665 | 211 | 4.413043 | 9.31152073 | Bacteria | 2 | Bacteria | Bacteria | 43.1 | 0.00538 | NR | HBG65297.1 | 166 | g37441 | i0 | 59.3 | 2.33175355450237 | 27 | 11 | 38.4 | 0 | 2 | 82 | 83 | 109 | HBG65297.1 hypothetical protein [Treponema sp.] | diamond | 492 | 43.5 | 0.990804597701149 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 28153029 | 28153029 | PRJNA560029_S_NODE_9825_length_368_cov_8.335593_g9601_i0 | PRJNA560029 | 9825 | 368 | 8.335593 | 30.67498224 | Spirochaeta lutea | 1480694 | Bacteria | Bacteria | 82.4 | 4.96e-17 | NR | WP_052078626.1 | 1480694 | g9601 | i0 | 44.8 | 0.709239130434783 | 87 | 48 | 70.9 | 0 | 366 | 106 | 71 | 157 | WP_052078626.1 Dps family protein [Spirochaeta lutea] | diamond | 261 | 82.4 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetaceae | Spirochaeta | Spirochaeta lutea | ||
| 29366723 | 29366723 | PRJNA560029_S_NODE_35809_length_239_cov_2.572289_g35585_i0 | PRJNA560029 | 35809 | 239 | 2.572289 | 6.14777071 | Bacteria | 2 | Bacteria | Bacteria | 95.5 | 5.069999999999999e-23 | NR | WP_147735636.1 | 29522 | g35585 | i0 | 55.3 | 2.84937238493724 | 76 | 34 | 95.4 | 0 | 239 | 12 | 13 | 88 | WP_147735636.1 PTS sugar transporter subunit IIA [Brachyspira aalborgi] | diamond | 681 | 95.5 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Brachyspirales | Brachyspiraceae | Brachyspira | Brachyspira aalborgi | ||
| 29777001 | 29777001 | PRJNA560029_S_NODE_19051_length_307_cov_4.435897_g18827_i0 | PRJNA560029 | 19051 | 307 | 4.435897 | 13.61820379 | Bacteria | 2 | Bacteria | Bacteria | 91.3 | 4.5e-20 | NR | MEE1165608.1 | 166 | g18827 | i0 | 45.5 | 7.7785016286645 | 99 | 53 | 96.7 | 1 | 2 | 298 | 110 | 207 | MEE1165608.1 response regulator transcription factor [Treponema sp.] | diamond | 2388 | 91.7 | 0.995637949836423 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. | ||
| 30615987 | 30615987 | PRJNA560029_S_NODE_14673_length_333_cov_1.350000_g14449_i0 | PRJNA560029 | 14673 | 333 | 1.35 | 4.4955 | Spirochaetales bacterium | 2026792 | Bacteria | Bacteria | 54.7 | 6.19e-6 | NR | MCK4541614.1 | 2026792 | g14449 | i0 | 45.6 | 1.10810810810811 | 57 | 29 | 49.5 | 1 | 304 | 140 | 324 | 380 | MCK4541614.1 iron-containing alcohol dehydrogenase [Spirochaetales bacterium] | diamond | 369 | 54.7 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Spirochaetales bacterium | ||||
| 31564601 | 31564601 | PRJNA560029_S_NODE_27796_length_267_cov_4.391753_g27572_i0 | PRJNA560029 | 27796 | 267 | 4.391753 | 11.72598051 | Treponema sp. CETP13 | 1908540 | Bacteria | Bacteria | 158 | 2.37e-45 | NR | OJF76429.1 | 1908540 | g27572 | i0 | 90.9 | 2.96629213483146 | 88 | 8 | 98.9 | 0 | 267 | 4 | 230 | 317 | OJF76429.1 MAG: cell filamentation protein Fic [Treponema sp. CETP13] | diamond | 792 | 158 | 1 | Bacteria | Pseudomonadati | Spirochaetota | Spirochaetia | Spirochaetales | Treponemataceae | Treponema | Treponema sp. CETP13 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;