RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA560029" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA560029 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10058949 10058949 PRJNA560029_S_NODE_11448_length_355_cov_2.390071_g11224_i0 PRJNA560029 11448 355 2.390071 8.48475205 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 5.39e-27   NR ACR58454.1 38249 g11224 i0 64.4 8.05352112676056 90 32 76.1 0 1 270 532 621 ACR58454.1 heat shock protein 70 [Trypanosoma carassii] diamond 2859 115 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma carassii
18981787 18981787 PRJNA560029_S_NODE_1075_length_758_cov_5.821898_g887_i0 PRJNA560029 1075 758 5.821898 44.12998684 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 220 6.02e-67   NR EPY33803.1 28005 g887 i0 77.3 13.032981530343 132 30 52.2 0 757 362 190 321 EPY33803.1 elongation factor 1-alpha [Strigomonas culicis] diamond 9879 222 0.990990990990991 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
27015637 27015637 PRJNA560029_S_NODE_35462_length_241_cov_1.375000_g35238_i0 PRJNA560029 35462 241 1.375 3.31375 Bodo saltans 75058 Euglenozoa other_Eukaryota 42.4 0.0492   NR CUG35605.1 75058 g35238 i0 31.7 0.746887966804979 60 41 74.7 0 188 9 434 493 CUG35605.1 unnamed protein product [Bodo saltans] diamond 180 42.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;