RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA560029" and tax_clade = "Caldisericota/Cryosericota group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Caldisericota/Cryosericota group · 2 ✖

bioproject 1

  • PRJNA560029 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29510391 29510391 PRJNA560029_S_NODE_9010_length_376_cov_4.237624_g8786_i0 PRJNA560029 9010 376 4.237624 15.93346624 Caldisericia bacterium 2758719 Bacteria Bacteria 66.2 9.32e-10   NR HXK51080.1 2758719 g8786 i0 30.3 2.56914893617021 109 71 87 1 375 49 350 453 HXK51080.1 MATE family efflux transporter [Caldisericia bacterium] diamond 966 66.2 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia       Caldisericia bacterium
32779425 32779425 PRJNA560029_S_NODE_19660_length_304_cov_5.004329_g19436_i0 PRJNA560029 19660 304 5.004329 15.21316016 Caldisericum 693074 Bacteria Bacteria 54.7 1.31e-6   NR MCI4463537.1 2499687 g19436 i0 42.9 1.38157894736842 70 32 64.1 2 302 108 41 107 MCI4463537.1 4Fe-4S binding protein [Caldisericum sp.] diamond 420 54.7 1 Bacteria Caldisericota/Cryosericota group Pseudomonadati Caldisericota Caldisericia Caldisericales Caldisericaceae Caldisericum Caldisericum sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;