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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA559720" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 34 ✖

bioproject 1

  • PRJNA559720 · 34 ✖

analysis 1

  • diamond · 34 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
543447 543447 PRJNA559720_P_NODE_13321_length_253_cov_1.377778_g13182_i0 PRJNA559720 13321 253 1.377778 3.48577834 Microbacterium proteolyticum 1572644 Bacteria Bacteria 104 1.49e-25   NR WP_367147232.1 1572644 g13182 i0 90.9 0.652173913043478 55 5 65.2 0 166 2 1 55 WP_367147232.1 hypothetical protein [Microbacterium proteolyticum] diamond 165 104 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium proteolyticum
1819140 1819140 PRJNA559720_P_NODE_10002_length_308_cov_1.310638_g9863_i0 PRJNA559720 10002 308 1.310638 4.03676504 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 129 3.11e-32   NR HYL53295.1 2080302 g9863 i0 63.4 1.97727272727273 101 37 98.4 0 3 305 181 281 HYL53295.1 adenylate/guanylate cyclase domain-containing protein [Acidimicrobiia bacterium] diamond 609 129 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
3094441 3094441 PRJNA559720_P_NODE_13743_length_250_cov_1.587571_g13604_i0 PRJNA559720 13743 250 1.587571 3.9689275 FCB group 1783270 Bacteria Bacteria 105 2.01e-24   NR HEV7481637.1 1909295 g13604 i0 67.5 8.628 80 25 96 1 248 9 406 484 HEV7481637.1 alkaline phosphatase D family protein [Solirubrobacterales bacterium] diamond 2157 105 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
5647303 5647303 PRJNA559720_P_NODE_10865_length_291_cov_2.082569_g10726_i0 PRJNA559720 10865 291 2.082569 6.06027579 Paractinoplanes bogorensis 1610840 Bacteria Bacteria 145 3.06e-41   NR WP_215796180.1 1610840 g10726 i0 76.6 0.969072164948454 94 22 96.9 0 284 3 132 225 WP_215796180.1 hypothetical protein [Paractinoplanes bogorensis] diamond 282 145 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Paractinoplanes Paractinoplanes bogorensis
5647369 5647369 PRJNA559720_P_NODE_15885_length_243_cov_0.905882_g15746_i0 PRJNA559720 15885 243 0.905882 2.20129326 Nostocoides australiense 99480 Bacteria Bacteria 166 2.5100000000000002e-49   NR WP_083433786.1 99480 g15746 i0 97.5 0.987654320987654 80 2 98.8 0 241 2 94 173 WP_083433786.1 FAD:protein FMN transferase [Nostocoides australiense] diamond 240 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides australiense
18395423 18395423 PRJNA559720_P_NODE_15735_length_243_cov_0.905882_g15596_i0 PRJNA559720 15735 243 0.905882 2.20129326 Mycobacteroides franklinii 948102 Bacteria Bacteria 163 1.94e-45   NR WP_164910229.1 948102 g15596 i0 95.1 1 81 4 100 0 243 1 383 463 WP_164910229.1 fatty acyl-AMP ligase [Mycobacteroides franklinii] diamond 243 163 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides franklinii
19669993 19669993 PRJNA559720_P_NODE_14276_length_249_cov_0.875000_g14137_i0 PRJNA559720 14276 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 168 2.0599999999999993e-52   NR WP_264068094.1 1773 g14137 i0 100 5 83 0 100 0 249 1 10 92 WP_264068094.1 LytTR family DNA-binding domain-containing protein, partial [Mycobacterium tuberculosis] diamond 1245 168 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis
26712900 26712900 PRJNA559720_P_NODE_6481_length_402_cov_1.151976_g6342_i0 PRJNA559720 6481 402 1.1519760000000001 4.63094352 Cohnella 329857 Bacteria Bacteria 104 2.35e-25   NR WP_204602556.1 768479 g6342 i0 42.9 1.78358208955224 119 68 88.8 0 368 12 23 141 WP_204602556.1 acyl-CoA thioesterase [Cohnella boryungensis] diamond 717 104 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Cohnella Cohnella boryungensis
26794197 26794197 PRJNA559720_P_NODE_7881_length_359_cov_1.076923_g7742_i0 PRJNA559720 7881 359 1.076923 3.86615357 Clostridiales bacterium 1898207 Bacteria Bacteria 88.2 2.95e-18   NR MBF0987186.1 1898207 g7742 i0 48.6 6.05013927576602 105 51 86.1 3 359 51 3 106 MBF0987186.1 aldo/keto reductase [Clostridiales bacterium] diamond 2172 88.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium
26857809 26857809 PRJNA559720_P_NODE_13841_length_250_cov_0.870056_g13702_i0 PRJNA559720 13841 250 0.870056 2.17514 Mycobacteroides franklinii 948102 Bacteria Bacteria 125 6.519999999999999e-34   NR WP_134048266.1 948102 g13702 i0 91.4 0.84 70 6 84 0 210 1 1 70 WP_134048266.1 phosphatase PAP2 family protein [Mycobacteroides franklinii] diamond 210 125 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacteroides Mycobacteroides franklinii
27332001 27332001 PRJNA559720_P_NODE_16023_length_242_cov_0.911243_g15884_i0 PRJNA559720 16023 242 0.911243 2.20520806 Rubrobacter sp. 2036010 Bacteria Bacteria 171 2.52e-50   NR HET9928995.1 2036010 g15884 i0 100 1.98347107438017 80 0 99.2 0 3 242 158 237 HET9928995.1 PQQ-dependent sugar dehydrogenase [Rubrobacter sp.] diamond 480 171 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter sp.
27552660 27552660 PRJNA559720_P_NODE_15744_length_243_cov_0.905882_g15605_i0 PRJNA559720 15744 243 0.905882 2.20129326 Thermoleophilaceae bacterium 2732252 Bacteria Bacteria 108 4.28e-29   NR MFL5885428.1 2732252 g15605 i0 80.3 5.64197530864198 66 13 81.5 0 242 45 11 76 MFL5885428.1 BolA family protein [Thermoleophilaceae bacterium] diamond 1371 108 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium
27647778 27647778 PRJNA559720_P_NODE_13384_length_252_cov_1.687151_g13245_i0 PRJNA559720 13384 252 1.687151 4.25162052 Patulibacter medicamentivorans 1097667 Bacteria Bacteria 73.6 6.18e-13   NR EHN11899.1 1097667 g13245 i0 85.1 0.55952380952381 47 7 56 0 112 252 681 727 EHN11899.1 Protein-L-isoaspartate O-methyltransferase [Patulibacter medicamentivorans] diamond 141 73.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Patulibacteraceae Patulibacter Patulibacter medicamentivorans
28121219 28121219 PRJNA559720_P_NODE_16305_length_241_cov_0.916667_g16166_i0 PRJNA559720 16305 241 0.916667 2.20916747 Gaiellaceae bacterium 2838783 Bacteria Bacteria 130 6.329999999999999e-35   NR MDX6376704.1 2838783 g16166 i0 82.5 0.995850622406639 80 14 99.6 0 240 1 162 241 MDX6376704.1 ribonuclease [Gaiellaceae bacterium] diamond 240 130 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
28278889 28278889 PRJNA559720_P_NODE_13706_length_251_cov_0.865169_g13567_i0 PRJNA559720 13706 251 0.865169 2.17157419 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 98.6 6.899999999999999e-24   NR HEX3305869.1 2339230 g13567 i0 77.6 0.693227091633466 58 13 69.3 0 249 76 106 163 HEX3305869.1 IS1595 family transposase [Streptosporangiaceae bacterium] diamond 174 98.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
28342270 28342270 PRJNA559720_P_NODE_12286_length_269_cov_1.535714_g12147_i0 PRJNA559720 12286 269 1.535714 4.13107066 Streptomyces sp. AC512_CC834 2823691 Bacteria Bacteria 43.5 0.0273   NR WP_217170943.1 2823691 g12147 i0 39.8 0.925650557620818 83 35 75.8 2 33 236 424 506 WP_217170943.1 mycofactocin system FadH/OYE family oxidoreductase 1 [Streptomyces sp. AC512_CC834] diamond 249 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. AC512_CC834
28987960 28987960 PRJNA559720_P_NODE_15108_length_245_cov_1.790698_g14969_i0 PRJNA559720 15108 245 1.790698 4.3872101 Ruminococcus 1263 Bacteria Bacteria 144 4.69e-41   NR WP_044976680.1 1514668 g14969 i0 76.9 1.91020408163265 78 18 95.5 0 235 2 1 78 WP_044976680.1 pyruvate formate-lyase-activating protein [Ruminococcus sp. HUN007] diamond 468 144 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Ruminococcus Ruminococcus sp. HUN007
29082565 29082565 PRJNA559720_P_NODE_3668_length_541_cov_1.561966_g3540_i0 PRJNA559720 3668 541 1.561966 8.45023606 Spiroplasma 2132 Bacteria Bacteria 51.2 4.87e-4   NR WP_040093749.1 2138 g3540 i0 32.4 1.19778188539741 108 60 52.7 3 9 293 45 152 WP_040093749.1 hypothetical protein [Spiroplasma poulsonii] diamond 648 51.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma poulsonii
29100121 29100121 PRJNA559720_P_NODE_14708_length_247_cov_0.885057_g14569_i0 PRJNA559720 14708 247 0.885057 2.18609079 Candidatus Obscuribacterales bacterium 2364082 Bacteria Bacteria 124 5.63e-31   NR MBY0357756.1 2364082 g14569 i0 71.3 1.94331983805668 80 23 97.2 0 245 6 175 254 MBY0357756.1 ATP-binding protein [Candidatus Obscuribacterales bacterium] diamond 480 124 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Obscuribacterales     Candidatus Obscuribacterales bacterium
29510363 29510363 PRJNA559720_P_NODE_15930_length_242_cov_1.668639_g15791_i0 PRJNA559720 15930 242 1.668639 4.03810638 Lactobacillus crispatus 47770 Bacteria Bacteria 86.7 2.58e-20   NR WP_205758276.1 47770 g15791 i0 95.7 0.867768595041322 70 3 86.8 0 3 212 5 74 WP_205758276.1 hypothetical protein, partial [Lactobacillus crispatus] diamond 210 86.7 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus crispatus
30205058 30205058 PRJNA559720_P_NODE_12792_length_261_cov_1.372340_g12653_i0 PRJNA559720 12792 261 1.37234 3.5818074 Rathayibacter sp. VKM Ac-28 1891630 Bacteria Bacteria 142 5.14e-40   NR WP_159987551.1 2609256 g12653 i0 80 0.977011494252874 85 17 97.7 0 2 256 172 256 WP_159987551.1 SDR family NAD(P)-dependent oxidoreductase [Rathayibacter sp. VKM Ac-2803] diamond 255 142 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rathayibacter Rathayibacter sp. VKM Ac-2803
30300569 30300569 PRJNA559720_P_NODE_4732_length_478_cov_10.101235_g4594_i0 PRJNA559720 4732 478 10.101235 48.2839033 Clostridium lundense 319475 Bacteria Bacteria 144 3.71e-41   NR WP_027623586.1 319475 g4594 i0 58.1 3.82217573221757 124 50 76.6 1 448 83 2 125 WP_027623586.1 RidA family protein [Clostridium lundense] diamond 1827 144 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium lundense
30458508 30458508 PRJNA559720_P_NODE_16453_length_241_cov_0.916667_g16314_i0 PRJNA559720 16453 241 0.916667 2.20916747 Lactiplantibacillus plantarum 1590 Bacteria Bacteria 48.1 7.1e-5   NR WP_222850852.1 1590 g16314 i0 57.1 0.435684647302905 35 15 43.6 0 127 23 66 100 WP_222850852.1 hypothetical protein, partial [Lactiplantibacillus plantarum] diamond 105 48.1 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactiplantibacillus Lactiplantibacillus plantarum
30710819 30710819 PRJNA559720_P_NODE_13654_length_251_cov_0.865169_g13515_i0 PRJNA559720 13654 251 0.865169 2.17157419 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 56.2 6.96e-7   NR HZA22420.1 2026734 g13515 i0 96.2 0.621513944223108 26 1 31.1 0 173 250 1 26 HZA22420.1 CoA transferase [Dehalococcoidia bacterium] diamond 156 56.2 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30710824 30710824 PRJNA559720_P_NODE_15694_length_243_cov_0.905882_g15555_i0 PRJNA559720 15694 243 0.905882 2.20129326 Mycobacteriaceae bacterium NPDC060252 3347083 Bacteria Bacteria 139 2.89e-36   NR MFD6197308.1 3347083 g15555 i0 88.8 1.97530864197531 80 9 98.8 0 241 2 136 215 MFD6197308.1 KGGVGR-motif variant AAA ATPase [Mycobacteriaceae bacterium NPDC060252] diamond 480 139 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae   Mycobacteriaceae bacterium NPDC060252
30932081 30932081 PRJNA559720_P_NODE_13334_length_253_cov_1.283333_g13195_i0 PRJNA559720 13334 253 1.283333 3.24683249 Bacilli bacterium 1903720 Bacteria Bacteria 42.7 0.0413   NR MBQ2873053.1 1903720 g13195 i0 30.4 0.936758893280632 79 52 90.1 1 20 247 136 214 MBQ2873053.1 insulinase family protein [Bacilli bacterium] diamond 237 42.7 1 Bacteria   Bacillati Bacillota Bacilli       Bacilli bacterium
31184510 31184510 PRJNA559720_P_NODE_6475_length_402_cov_1.422492_g6336_i0 PRJNA559720 6475 402 1.422492 5.71841784 Peptoniphilaceae bacterium 1891242 Bacteria Bacteria 46.2 0.00754   NR MDD7463520.1 1891242 g6336 i0 33.7 0.708955223880597 95 51 67.2 4 293 24 18 105 MDD7463520.1 AraC family transcriptional regulator [Peptoniphilaceae bacterium] diamond 285 46.2 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae   Peptoniphilaceae bacterium
31469626 31469626 PRJNA559720_P_NODE_6056_length_417_cov_2.281977_g5917_i0 PRJNA559720 6056 417 2.281977 9.51584409 Actinomycetota bacterium 2900548 Bacteria Bacteria 44.3 0.0399   NR MCA1679382.1 2900548 g5917 i0 40.3 0.553956834532374 77 36 48.2 2 373 173 54 130 MCA1679382.1 metal-dependent hydrolase [Actinomycetota bacterium] diamond 231 44.3 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31564592 31564592 PRJNA559720_P_NODE_5816_length_427_cov_1.553672_g5677_i0 PRJNA559720 5816 427 1.553672 6.63417944 Clostridia bacterium 2044939 Bacteria Bacteria 45.4 0.027   NR MBR3697310.1 2044939 g5677 i0 30.4 0.786885245901639 112 69 78.7 2 395 60 255 357 MBR3697310.1 DNA polymerase III subunit gamma/tau [Clostridia bacterium] diamond 336 45.4 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
31659032 31659032 PRJNA559720_P_NODE_13977_length_250_cov_0.870056_g13838_i0 PRJNA559720 13977 250 0.870056 2.17514 Arthrobacter sp. M2 1667 Bacteria Bacteria 82.4 4.23e-16   NR WP_017198210.1 1197706 g13838 i0 50 1.968 82 41 98.4 0 3 248 186 267 WP_017198210.1 ABC transporter ATP-binding protein [Arthrobacter sp. M2012083] diamond 492 82.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. M2012083
31817242 31817242 PRJNA559720_P_NODE_6617_length_397_cov_3.191358_g6478_i0 PRJNA559720 6617 397 3.191358 12.66969126 Holdemanella biformis 1735 Bacteria Bacteria 47.8 0.00343   NR WP_118356857.1 1735 g6478 i0 35.7 0.846347607052897 112 61 80.9 4 347 27 115 220 WP_118356857.1 DEAD/DEAH box helicase [Holdemanella biformis] diamond 336 47.8 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Holdemanella Holdemanella biformis
32576850 32576850 PRJNA559720_P_NODE_16559_length_228_cov_4.200000_g16420_i0 PRJNA559720 16559 228 4.2 9.576 Microcoleus sp. SU_5_3 2720482 Bacteria Bacteria 55.8 5.34e-7   NR NJK68502.1 2720482 g16420 i0 32.9 1.72368421052632 70 47 92.1 0 215 6 152 221 NJK68502.1 WD40 repeat domain-containing protein [Microcoleus sp. SU_5_3] diamond 393 55.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Microcoleaceae Microcoleus Microcoleus sp. SU_5_3
32796827 32796827 PRJNA559720_P_NODE_15740_length_243_cov_0.905882_g15601_i0 PRJNA559720 15740 243 0.905882 2.20129326 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 171 1.59e-49   NR MCQ2499216.1 1898203 g15601 i0 97.5 0.987654320987654 80 2 98.8 0 3 242 234 313 MCQ2499216.1 AAA family ATPase [Lachnospiraceae bacterium] diamond 240 171 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
32891391 32891391 PRJNA559720_P_NODE_16420_length_241_cov_0.916667_g16281_i0 PRJNA559720 16420 241 0.916667 2.20916747 Candidatus Obscuribacterales bacterium 2364082 Bacteria Bacteria 106 6.08e-25   NR MBY0548625.1 2364082 g16281 i0 63.3 2.95020746887967 79 29 98.3 0 3 239 241 319 MBY0548625.1 cytosine permease [Candidatus Obscuribacterales bacterium] diamond 711 106 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria   Candidatus Obscuribacterales     Candidatus Obscuribacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;